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Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water

Formamide contains the four elements (C, H, O, and N) most required for life and it is attractive as a potential prebiotic starting material for nucleobase synthesis. In the presence of catalysts (for example, TiO(2)) and with moderate heating, formamide can pass surface energy barriers, yielding a...

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Autores principales: Dushanov, E, Kholmurodov, Kh, Yasuoka, K
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Bentham Open 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680988/
https://www.ncbi.nlm.nih.gov/pubmed/23802018
http://dx.doi.org/10.2174/1874091X01307010033
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author Dushanov, E
Kholmurodov, Kh
Yasuoka, K
author_facet Dushanov, E
Kholmurodov, Kh
Yasuoka, K
author_sort Dushanov, E
collection PubMed
description Formamide contains the four elements (C, H, O, and N) most required for life and it is attractive as a potential prebiotic starting material for nucleobase synthesis. In the presence of catalysts (for example, TiO(2)) and with moderate heating, formamide can pass surface energy barriers, yielding a complete set of nucleic bases and acyclonucleosides, and favoring both phosphorylations and transphosphorylations necessary for life. In the reaction mechanism, interaction with water seems to be an essential factor for the formamide molecule to function. In this paper, a formamide–water solution on a TiO$_2$ (anatase) surface is simulated using the molecular dynamics method, and activation energy calculations are performed for the temperature range of T = 250 K to T = 400 K. A correlation is established between the diffusion and density profiles for the formamide and water molecules on an anatase surface. Also, the calculated activation energies of the formamide–water–anatase and formamide–water–platinum systems are compared. A comparative analysis is performed of the behavior of formamide–water and ethanol–water interaction on the same (anatase and platinum) surfaces.
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spelling pubmed-36809882013-06-25 Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water Dushanov, E Kholmurodov, Kh Yasuoka, K Open Biochem J Article Formamide contains the four elements (C, H, O, and N) most required for life and it is attractive as a potential prebiotic starting material for nucleobase synthesis. In the presence of catalysts (for example, TiO(2)) and with moderate heating, formamide can pass surface energy barriers, yielding a complete set of nucleic bases and acyclonucleosides, and favoring both phosphorylations and transphosphorylations necessary for life. In the reaction mechanism, interaction with water seems to be an essential factor for the formamide molecule to function. In this paper, a formamide–water solution on a TiO$_2$ (anatase) surface is simulated using the molecular dynamics method, and activation energy calculations are performed for the temperature range of T = 250 K to T = 400 K. A correlation is established between the diffusion and density profiles for the formamide and water molecules on an anatase surface. Also, the calculated activation energies of the formamide–water–anatase and formamide–water–platinum systems are compared. A comparative analysis is performed of the behavior of formamide–water and ethanol–water interaction on the same (anatase and platinum) surfaces. Bentham Open 2013-03-22 /pmc/articles/PMC3680988/ /pubmed/23802018 http://dx.doi.org/10.2174/1874091X01307010033 Text en © Dushanov et al.; Licensee Bentham Open. http://creativecommons.org/licenses/by-nc/3.0/ This is an open access article licensed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited.
spellingShingle Article
Dushanov, E
Kholmurodov, Kh
Yasuoka, K
Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title_full Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title_fullStr Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title_full_unstemmed Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title_short Activation Energy Calculations for Formamide–TiO(2) and Formamide–Pt Interactions in the Presence of Water
title_sort activation energy calculations for formamide–tio(2) and formamide–pt interactions in the presence of water
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680988/
https://www.ncbi.nlm.nih.gov/pubmed/23802018
http://dx.doi.org/10.2174/1874091X01307010033
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