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Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc

BACKGROUND: We present a software tool called SENB, which allows the geometric and biophysical neuronal properties in a simple computational model of a Hodgkin-Huxley (HH) axon to be changed. The aim of this work is to develop a didactic and easy-to-use computational tool in the NEURON simulation en...

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Autores principales: Hernández, Oscar E, Zurek, Eduardo E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3685589/
https://www.ncbi.nlm.nih.gov/pubmed/23675833
http://dx.doi.org/10.1186/1472-6920-13-70
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author Hernández, Oscar E
Zurek, Eduardo E
author_facet Hernández, Oscar E
Zurek, Eduardo E
author_sort Hernández, Oscar E
collection PubMed
description BACKGROUND: We present a software tool called SENB, which allows the geometric and biophysical neuronal properties in a simple computational model of a Hodgkin-Huxley (HH) axon to be changed. The aim of this work is to develop a didactic and easy-to-use computational tool in the NEURON simulation environment, which allows graphical visualization of both the passive and active conduction parameters and the geometric characteristics of a cylindrical axon with HH properties. RESULTS: The SENB software offers several advantages for teaching and learning electrophysiology. First, SENB offers ease and flexibility in determining the number of stimuli. Second, SENB allows immediate and simultaneous visualization, in the same window and time frame, of the evolution of the electrophysiological variables. Third, SENB calculates parameters such as time and space constants, stimuli frequency, cellular area and volume, sodium and potassium equilibrium potentials, and propagation velocity of the action potentials. Furthermore, it allows the user to see all this information immediately in the main window. Finally, with just one click SENB can save an image of the main window as evidence. CONCLUSIONS: The SENB software is didactic and versatile, and can be used to improve and facilitate the teaching and learning of the underlying mechanisms in the electrical activity of an axon using the biophysical properties of the squid giant axon.
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spelling pubmed-36855892013-06-26 Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc Hernández, Oscar E Zurek, Eduardo E BMC Med Educ Software BACKGROUND: We present a software tool called SENB, which allows the geometric and biophysical neuronal properties in a simple computational model of a Hodgkin-Huxley (HH) axon to be changed. The aim of this work is to develop a didactic and easy-to-use computational tool in the NEURON simulation environment, which allows graphical visualization of both the passive and active conduction parameters and the geometric characteristics of a cylindrical axon with HH properties. RESULTS: The SENB software offers several advantages for teaching and learning electrophysiology. First, SENB offers ease and flexibility in determining the number of stimuli. Second, SENB allows immediate and simultaneous visualization, in the same window and time frame, of the evolution of the electrophysiological variables. Third, SENB calculates parameters such as time and space constants, stimuli frequency, cellular area and volume, sodium and potassium equilibrium potentials, and propagation velocity of the action potentials. Furthermore, it allows the user to see all this information immediately in the main window. Finally, with just one click SENB can save an image of the main window as evidence. CONCLUSIONS: The SENB software is didactic and versatile, and can be used to improve and facilitate the teaching and learning of the underlying mechanisms in the electrical activity of an axon using the biophysical properties of the squid giant axon. BioMed Central 2013-05-15 /pmc/articles/PMC3685589/ /pubmed/23675833 http://dx.doi.org/10.1186/1472-6920-13-70 Text en Copyright © 2013 Hernández and Zurek; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Hernández, Oscar E
Zurek, Eduardo E
Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title_full Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title_fullStr Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title_full_unstemmed Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title_short Teaching and learning the Hodgkin-Huxley model based on software developed in NEURON’s programming language hoc
title_sort teaching and learning the hodgkin-huxley model based on software developed in neuron’s programming language hoc
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3685589/
https://www.ncbi.nlm.nih.gov/pubmed/23675833
http://dx.doi.org/10.1186/1472-6920-13-70
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