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A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals

When protein crystals are submicrometre-sized, X-ray radiation damage precludes conventional diffraction data collection. For crystals that are of the order of 100 nm in size, at best only single-shot diffraction patterns can be collected and rotation data collection has not been possible, irrespect...

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Autores principales: Nederlof, Igor, van Genderen, Eric, Li, Yao-Wang, Abrahams, Jan Pieter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689525/
https://www.ncbi.nlm.nih.gov/pubmed/23793148
http://dx.doi.org/10.1107/S0907444913009700
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author Nederlof, Igor
van Genderen, Eric
Li, Yao-Wang
Abrahams, Jan Pieter
author_facet Nederlof, Igor
van Genderen, Eric
Li, Yao-Wang
Abrahams, Jan Pieter
author_sort Nederlof, Igor
collection PubMed
description When protein crystals are submicrometre-sized, X-ray radiation damage precludes conventional diffraction data collection. For crystals that are of the order of 100 nm in size, at best only single-shot diffraction patterns can be collected and rotation data collection has not been possible, irrespective of the diffraction technique used. Here, it is shown that at a very low electron dose (at most 0.1 e(−) Å(−2)), a Medipix2 quantum area detector is sufficiently sensitive to allow the collection of a 30-frame rotation series of 200 keV electron-diffraction data from a single ∼100 nm thick protein crystal. A highly parallel 200 keV electron beam (λ = 0.025 Å) allowed observation of the curvature of the Ewald sphere at low resolution, indicating a combined mosaic spread/beam divergence of at most 0.4°. This result shows that volumes of crystal with low mosaicity can be pinpointed in electron diffraction. It is also shown that strategies and data-analysis software (MOSFLM and SCALA) from X-ray protein crystallography can be used in principle for analysing electron-diffraction data from three-dimensional nanocrystals of proteins.
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spelling pubmed-36895252013-06-28 A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals Nederlof, Igor van Genderen, Eric Li, Yao-Wang Abrahams, Jan Pieter Acta Crystallogr D Biol Crystallogr Research Papers When protein crystals are submicrometre-sized, X-ray radiation damage precludes conventional diffraction data collection. For crystals that are of the order of 100 nm in size, at best only single-shot diffraction patterns can be collected and rotation data collection has not been possible, irrespective of the diffraction technique used. Here, it is shown that at a very low electron dose (at most 0.1 e(−) Å(−2)), a Medipix2 quantum area detector is sufficiently sensitive to allow the collection of a 30-frame rotation series of 200 keV electron-diffraction data from a single ∼100 nm thick protein crystal. A highly parallel 200 keV electron beam (λ = 0.025 Å) allowed observation of the curvature of the Ewald sphere at low resolution, indicating a combined mosaic spread/beam divergence of at most 0.4°. This result shows that volumes of crystal with low mosaicity can be pinpointed in electron diffraction. It is also shown that strategies and data-analysis software (MOSFLM and SCALA) from X-ray protein crystallography can be used in principle for analysing electron-diffraction data from three-dimensional nanocrystals of proteins. International Union of Crystallography 2013-07-01 2013-06-15 /pmc/articles/PMC3689525/ /pubmed/23793148 http://dx.doi.org/10.1107/S0907444913009700 Text en © Nederlof et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Nederlof, Igor
van Genderen, Eric
Li, Yao-Wang
Abrahams, Jan Pieter
A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title_full A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title_fullStr A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title_full_unstemmed A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title_short A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
title_sort medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689525/
https://www.ncbi.nlm.nih.gov/pubmed/23793148
http://dx.doi.org/10.1107/S0907444913009700
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