Cargando…
MISTIC: mutual information server to infer coevolution
MISTIC (mutual information server to infer coevolution) is a web server for graphical representation of the information contained within a MSA (multiple sequence alignment) and a complete analysis tool for Mutual Information networks in protein families. The server outputs a graphical visualization...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692073/ https://www.ncbi.nlm.nih.gov/pubmed/23716641 http://dx.doi.org/10.1093/nar/gkt427 |
_version_ | 1782274563326869504 |
---|---|
author | Simonetti, Franco L. Teppa, Elin Chernomoretz, Ariel Nielsen, Morten Marino Buslje, Cristina |
author_facet | Simonetti, Franco L. Teppa, Elin Chernomoretz, Ariel Nielsen, Morten Marino Buslje, Cristina |
author_sort | Simonetti, Franco L. |
collection | PubMed |
description | MISTIC (mutual information server to infer coevolution) is a web server for graphical representation of the information contained within a MSA (multiple sequence alignment) and a complete analysis tool for Mutual Information networks in protein families. The server outputs a graphical visualization of several information-related quantities using a circos representation. This provides an integrated view of the MSA in terms of (i) the mutual information (MI) between residue pairs, (ii) sequence conservation and (iii) the residue cumulative and proximity MI scores. Further, an interactive interface to explore and characterize the MI network is provided. Several tools are offered for selecting subsets of nodes from the network for visualization. Node coloring can be set to match different attributes, such as conservation, cumulative MI, proximity MI and secondary structure. Finally, a zip file containing all results can be downloaded. The server is available at http://mistic.leloir.org.ar. In summary, MISTIC allows for a comprehensive, compact, visually rich view of the information contained within an MSA in a manner unique to any other publicly available web server. In particular, the use of circos representation of MI networks and the visualization of the cumulative MI and proximity MI concepts is novel. |
format | Online Article Text |
id | pubmed-3692073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-36920732013-06-25 MISTIC: mutual information server to infer coevolution Simonetti, Franco L. Teppa, Elin Chernomoretz, Ariel Nielsen, Morten Marino Buslje, Cristina Nucleic Acids Res Articles MISTIC (mutual information server to infer coevolution) is a web server for graphical representation of the information contained within a MSA (multiple sequence alignment) and a complete analysis tool for Mutual Information networks in protein families. The server outputs a graphical visualization of several information-related quantities using a circos representation. This provides an integrated view of the MSA in terms of (i) the mutual information (MI) between residue pairs, (ii) sequence conservation and (iii) the residue cumulative and proximity MI scores. Further, an interactive interface to explore and characterize the MI network is provided. Several tools are offered for selecting subsets of nodes from the network for visualization. Node coloring can be set to match different attributes, such as conservation, cumulative MI, proximity MI and secondary structure. Finally, a zip file containing all results can be downloaded. The server is available at http://mistic.leloir.org.ar. In summary, MISTIC allows for a comprehensive, compact, visually rich view of the information contained within an MSA in a manner unique to any other publicly available web server. In particular, the use of circos representation of MI networks and the visualization of the cumulative MI and proximity MI concepts is novel. Oxford University Press 2013-07 2013-05-28 /pmc/articles/PMC3692073/ /pubmed/23716641 http://dx.doi.org/10.1093/nar/gkt427 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Simonetti, Franco L. Teppa, Elin Chernomoretz, Ariel Nielsen, Morten Marino Buslje, Cristina MISTIC: mutual information server to infer coevolution |
title | MISTIC: mutual information server to infer coevolution |
title_full | MISTIC: mutual information server to infer coevolution |
title_fullStr | MISTIC: mutual information server to infer coevolution |
title_full_unstemmed | MISTIC: mutual information server to infer coevolution |
title_short | MISTIC: mutual information server to infer coevolution |
title_sort | mistic: mutual information server to infer coevolution |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692073/ https://www.ncbi.nlm.nih.gov/pubmed/23716641 http://dx.doi.org/10.1093/nar/gkt427 |
work_keys_str_mv | AT simonettifrancol misticmutualinformationservertoinfercoevolution AT teppaelin misticmutualinformationservertoinfercoevolution AT chernomoretzariel misticmutualinformationservertoinfercoevolution AT nielsenmorten misticmutualinformationservertoinfercoevolution AT marinobusljecristina misticmutualinformationservertoinfercoevolution |