Cargando…

RNAstructure: web servers for RNA secondary structure prediction and analysis

RNAstructure is a software package for RNA secondary structure prediction and analysis. This contribution describes a new set of web servers to provide its functionality. The web server offers RNA secondary structure prediction, including free energy minimization, maximum expected accuracy structure...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bellaousov, Stanislav, Reuter, Jessica S., Seetin, Matthew G., Mathews, David H.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2013
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692136/ https://www.ncbi.nlm.nih.gov/pubmed/23620284 http://dx.doi.org/10.1093/nar/gkt290

Ejemplares similares

RNAstructure: software for RNA secondary structure prediction and analysis
por: Reuter, Jessica S, et al.
Publicado: (2010)

Accelerated RNA secondary structure design using preselected sequences for helices and loops
por: Bellaousov, Stanislav, et al.
Publicado: (2018)

The RNAmute web server for the mutational analysis of RNA secondary structures
por: Churkin, Alexander, et al.
Publicado: (2011)

CentroidFold: a web server for RNA secondary structure prediction
por: Sato, Kengo, et al.
Publicado: (2009)

Web-Beagle: a web server for the alignment of RNA secondary structures
por: Mattei, Eugenio, et al.
Publicado: (2015)

Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints
por: Chen, Jonathan L., et al.
Publicado: (2015)

The RNAsnp web server: predicting SNP effects on local RNA secondary structure
por: Sabarinathan, Radhakrishnan, et al.
Publicado: (2013)

cRNAsp12 Web Server for the Prediction of Circular RNA Secondary Structures and Stabilities
por: Wang, Fengfei, et al.
Publicado: (2023)

RNALOSS: a web server for RNA locally optimal secondary structures
por: Clote, P.
Publicado: (2005)

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features
por: Tsybulskyi, Volodymyr, et al.
Publicado: (2023)

RNAmutants: a web server to explore the mutational landscape of RNA secondary structures
por: Waldispühl, Jerome, et al.
Publicado: (2009)

SETTER: web server for RNA structure comparison
por: Čech, Petr, et al.
Publicado: (2012)

R-chie: a web server and R package for visualizing RNA secondary structures
por: Lai, Daniel, et al.
Publicado: (2012)

Rtools: a web server for various secondary structural analyses on single RNA sequences
por: Hamada, Michiaki, et al.
Publicado: (2016)

FRASS: the web-server for RNA structural comparison
por: Kirillova, Svetlana, et al.
Publicado: (2010)

Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico
por: Hong, Jun-Jie, et al.
Publicado: (2013)

Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction
por: Xu, Xiaojun, et al.
Publicado: (2014)

CROSSalive: a web server for predicting the in vivo structure of RNA molecules
por: Ponti, Riccardo Delli, et al.
Publicado: (2019)

TBI Server: A Web Server for Predicting Ion Effects in RNA Folding
por: Zhu, Yuhong, et al.
Publicado: (2015)

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation
por: Lai, Daniel, et al.
Publicado: (2014)

MultiSETTER: web server for multiple RNA structure comparison
por: Čech, Petr, et al.
Publicado: (2015)

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA
por: Gamache, Eric R., et al.
Publicado: (2017)

The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
por: Gruber, Andreas R., et al.
Publicado: (2007)

MCTBI: a web server for predicting metal ion effects in RNA structures
por: Sun, Li-Zhen, et al.
Publicado: (2017)

The ARTS web server for aligning RNA tertiary structures
por: Dror, Oranit, et al.
Publicado: (2006)

RNAbor: a web server for RNA structural neighbors
por: Freyhult, Eva, et al.
Publicado: (2007)

GalaxyWEB server for protein structure prediction and refinement
por: Ko, Junsu, et al.
Publicado: (2012)

mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances
por: Lai, Wan-Jung C., et al.
Publicado: (2018)

The Jpred 3 secondary structure prediction server
por: Cole, Christian, et al.
Publicado: (2008)

SFESA: a web server for pairwise alignment refinement by secondary structure shifts
por: Tong, Jing, et al.
Publicado: (2015)

PRince: a web server for structural and physicochemical analysis of Protein-RNA interface
por: Barik, Amita, et al.
Publicado: (2012)

RNAProbe: a web server for normalization and analysis of RNA structure probing data
por: Wirecki, Tomasz K, et al.
Publicado: (2020)

Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server
por: Jung, Sunghoon, et al.
Publicado: (2013)

MISA-web: a web server for microsatellite prediction
por: Beier, Sebastian, et al.
Publicado: (2017)

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction
por: Puton, Tomasz, et al.
Publicado: (2013)

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction
por: Puton, Tomasz, et al.
Publicado: (2014)

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
por: Xayaphoummine, A., et al.
Publicado: (2005)

corRna: a web server for predicting multiple-point deleterious mutations in structural RNAs
por: Lam, Edmund, et al.
Publicado: (2011)

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data
por: Wu, Yang, et al.
Publicado: (2016)

SeMPI: a genome-based secondary metabolite prediction and identification web server
por: Zierep, Paul F., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_pln0fr1ciu806mmctkk5ek44im