Cargando…
LOcating Non-Unique matched Tags (LONUT) to Improve the Detection of the Enriched Regions for ChIP-seq Data
One big limitation of computational tools for analyzing ChIP-seq data is that most of them ignore non-unique tags (NUTs) that match the human genome even though NUTs comprise up to 60% of all raw tags in ChIP-seq data. Effectively utilizing these NUTs would increase the sequencing depth and allow a...
Autores principales: | Wang, Rui, Hsu, Hang-Kai, Blattler, Adam, Wang, Yisong, Lan, Xun, Wang, Yao, Hsu, Pei-Yin, Leu, Yu-Wei, Huang, Tim H.-M., Farnham, Peggy J., Jin, Victor X. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692479/ https://www.ncbi.nlm.nih.gov/pubmed/23825685 http://dx.doi.org/10.1371/journal.pone.0067788 |
Ejemplares similares
-
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data
por: Wu, George, et al.
Publicado: (2013) -
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
por: Lan, Xun, et al.
Publicado: (2012) -
ChIP-Enrich: gene set enrichment testing for ChIP-seq data
por: Welch, Ryan P., et al.
Publicado: (2014) -
Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data
por: Carroll, Thomas S., et al.
Publicado: (2014) -
W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
por: Lan, Xun, et al.
Publicado: (2011)