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Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug de...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694871/ https://www.ncbi.nlm.nih.gov/pubmed/23826350 http://dx.doi.org/10.1371/journal.pone.0067980 |
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author | Kumar, Runjun D. Chang, Li-Wei Ellis, Matthew J. Bose, Ron |
author_facet | Kumar, Runjun D. Chang, Li-Wei Ellis, Matthew J. Bose, Ron |
author_sort | Kumar, Runjun D. |
collection | PubMed |
description | A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug development. These classes were comprehensively populated by combining and manually curating data from multiple specialized and general databases. dGene was used by The Cancer Genome Atlas squamous cell lung cancer project, and here we further demonstrate its utility using recently released breast cancer genome sequencing data. dGene is designed to be usable by any cancer researcher without the need for support from a bioinformatics specialist. A full description of dGene and options for its implementation are provided here. |
format | Online Article Text |
id | pubmed-3694871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-36948712013-07-03 Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data Kumar, Runjun D. Chang, Li-Wei Ellis, Matthew J. Bose, Ron PLoS One Research Article A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug development. These classes were comprehensively populated by combining and manually curating data from multiple specialized and general databases. dGene was used by The Cancer Genome Atlas squamous cell lung cancer project, and here we further demonstrate its utility using recently released breast cancer genome sequencing data. dGene is designed to be usable by any cancer researcher without the need for support from a bioinformatics specialist. A full description of dGene and options for its implementation are provided here. Public Library of Science 2013-06-27 /pmc/articles/PMC3694871/ /pubmed/23826350 http://dx.doi.org/10.1371/journal.pone.0067980 Text en © 2013 Kumar et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Kumar, Runjun D. Chang, Li-Wei Ellis, Matthew J. Bose, Ron Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title | Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title_full | Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title_fullStr | Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title_full_unstemmed | Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title_short | Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data |
title_sort | prioritizing potentially druggable mutations with dgene: an annotation tool for cancer genome sequencing data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694871/ https://www.ncbi.nlm.nih.gov/pubmed/23826350 http://dx.doi.org/10.1371/journal.pone.0067980 |
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