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Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data

A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug de...

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Detalles Bibliográficos
Autores principales: Kumar, Runjun D., Chang, Li-Wei, Ellis, Matthew J., Bose, Ron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694871/
https://www.ncbi.nlm.nih.gov/pubmed/23826350
http://dx.doi.org/10.1371/journal.pone.0067980
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author Kumar, Runjun D.
Chang, Li-Wei
Ellis, Matthew J.
Bose, Ron
author_facet Kumar, Runjun D.
Chang, Li-Wei
Ellis, Matthew J.
Bose, Ron
author_sort Kumar, Runjun D.
collection PubMed
description A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug development. These classes were comprehensively populated by combining and manually curating data from multiple specialized and general databases. dGene was used by The Cancer Genome Atlas squamous cell lung cancer project, and here we further demonstrate its utility using recently released breast cancer genome sequencing data. dGene is designed to be usable by any cancer researcher without the need for support from a bioinformatics specialist. A full description of dGene and options for its implementation are provided here.
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spelling pubmed-36948712013-07-03 Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data Kumar, Runjun D. Chang, Li-Wei Ellis, Matthew J. Bose, Ron PLoS One Research Article A major goal of cancer genome sequencing is to identify mutations or other somatic alterations that can be targeted by selective and specific drugs. dGene is an annotation tool designed to rapidly identify genes belonging to one of ten druggable classes that are frequently targeted in cancer drug development. These classes were comprehensively populated by combining and manually curating data from multiple specialized and general databases. dGene was used by The Cancer Genome Atlas squamous cell lung cancer project, and here we further demonstrate its utility using recently released breast cancer genome sequencing data. dGene is designed to be usable by any cancer researcher without the need for support from a bioinformatics specialist. A full description of dGene and options for its implementation are provided here. Public Library of Science 2013-06-27 /pmc/articles/PMC3694871/ /pubmed/23826350 http://dx.doi.org/10.1371/journal.pone.0067980 Text en © 2013 Kumar et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Kumar, Runjun D.
Chang, Li-Wei
Ellis, Matthew J.
Bose, Ron
Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title_full Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title_fullStr Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title_full_unstemmed Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title_short Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data
title_sort prioritizing potentially druggable mutations with dgene: an annotation tool for cancer genome sequencing data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694871/
https://www.ncbi.nlm.nih.gov/pubmed/23826350
http://dx.doi.org/10.1371/journal.pone.0067980
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