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CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CH...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697781/ https://www.ncbi.nlm.nih.gov/pubmed/23818526 http://dx.doi.org/10.1093/database/bat047 |
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author | Wu, Leihong Li, Xiang Yang, Jihong Liu, Yufeng Fan, Xiaohui Cheng, Yiyu |
author_facet | Wu, Leihong Li, Xiang Yang, Jihong Liu, Yufeng Fan, Xiaohui Cheng, Yiyu |
author_sort | Wu, Leihong |
collection | PubMed |
description | Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CHD. Accordingly, we construct this knowledgebase, CHD@ZJU, which records CHD-related information (genes, pathways, drugs and references) collected from different resources and through text-mining method followed by manual confirmation. In current release, CHD@ZJU contains 660 CHD-related genes, 45 common pathways and 1405 drugs accompanied with >8000 supporting references. Almost half of the genes collected in CHD@ZJU were novel to other publicly available CHD databases. Additionally, CHD@ZJU incorporated the protein–protein interactions to investigate the cross-talk within the pathways from a multi-layer network view. These functions offered by CHD@ZJU would allow researchers to dissect the molecular mechanism of CHD in a systematic manner and therefore facilitate the research on CHD-related multi-target therapeutic discovery. Database URL: http://tcm.zju.edu.cn/chd/ |
format | Online Article Text |
id | pubmed-3697781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-36977812013-07-01 CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease Wu, Leihong Li, Xiang Yang, Jihong Liu, Yufeng Fan, Xiaohui Cheng, Yiyu Database (Oxford) Database Tool Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CHD. Accordingly, we construct this knowledgebase, CHD@ZJU, which records CHD-related information (genes, pathways, drugs and references) collected from different resources and through text-mining method followed by manual confirmation. In current release, CHD@ZJU contains 660 CHD-related genes, 45 common pathways and 1405 drugs accompanied with >8000 supporting references. Almost half of the genes collected in CHD@ZJU were novel to other publicly available CHD databases. Additionally, CHD@ZJU incorporated the protein–protein interactions to investigate the cross-talk within the pathways from a multi-layer network view. These functions offered by CHD@ZJU would allow researchers to dissect the molecular mechanism of CHD in a systematic manner and therefore facilitate the research on CHD-related multi-target therapeutic discovery. Database URL: http://tcm.zju.edu.cn/chd/ Oxford University Press 2013-07-01 /pmc/articles/PMC3697781/ /pubmed/23818526 http://dx.doi.org/10.1093/database/bat047 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Tool Wu, Leihong Li, Xiang Yang, Jihong Liu, Yufeng Fan, Xiaohui Cheng, Yiyu CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title_full | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title_fullStr | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title_full_unstemmed | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title_short | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease |
title_sort | chd@zju: a knowledgebase providing network-based research platform on coronary heart disease |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697781/ https://www.ncbi.nlm.nih.gov/pubmed/23818526 http://dx.doi.org/10.1093/database/bat047 |
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