Cargando…

CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease

Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CH...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Leihong, Li, Xiang, Yang, Jihong, Liu, Yufeng, Fan, Xiaohui, Cheng, Yiyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697781/
https://www.ncbi.nlm.nih.gov/pubmed/23818526
http://dx.doi.org/10.1093/database/bat047
_version_ 1782275203113418752
author Wu, Leihong
Li, Xiang
Yang, Jihong
Liu, Yufeng
Fan, Xiaohui
Cheng, Yiyu
author_facet Wu, Leihong
Li, Xiang
Yang, Jihong
Liu, Yufeng
Fan, Xiaohui
Cheng, Yiyu
author_sort Wu, Leihong
collection PubMed
description Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CHD. Accordingly, we construct this knowledgebase, CHD@ZJU, which records CHD-related information (genes, pathways, drugs and references) collected from different resources and through text-mining method followed by manual confirmation. In current release, CHD@ZJU contains 660 CHD-related genes, 45 common pathways and 1405 drugs accompanied with >8000 supporting references. Almost half of the genes collected in CHD@ZJU were novel to other publicly available CHD databases. Additionally, CHD@ZJU incorporated the protein–protein interactions to investigate the cross-talk within the pathways from a multi-layer network view. These functions offered by CHD@ZJU would allow researchers to dissect the molecular mechanism of CHD in a systematic manner and therefore facilitate the research on CHD-related multi-target therapeutic discovery. Database URL: http://tcm.zju.edu.cn/chd/
format Online
Article
Text
id pubmed-3697781
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-36977812013-07-01 CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease Wu, Leihong Li, Xiang Yang, Jihong Liu, Yufeng Fan, Xiaohui Cheng, Yiyu Database (Oxford) Database Tool Coronary heart disease (CHD), the leading cause of global morbidity and mortality in adults, has been reported to be associated with hundreds of genes. A comprehensive understanding of the CHD-related genes and their corresponding interactions is essential to advance the translational research on CHD. Accordingly, we construct this knowledgebase, CHD@ZJU, which records CHD-related information (genes, pathways, drugs and references) collected from different resources and through text-mining method followed by manual confirmation. In current release, CHD@ZJU contains 660 CHD-related genes, 45 common pathways and 1405 drugs accompanied with >8000 supporting references. Almost half of the genes collected in CHD@ZJU were novel to other publicly available CHD databases. Additionally, CHD@ZJU incorporated the protein–protein interactions to investigate the cross-talk within the pathways from a multi-layer network view. These functions offered by CHD@ZJU would allow researchers to dissect the molecular mechanism of CHD in a systematic manner and therefore facilitate the research on CHD-related multi-target therapeutic discovery. Database URL: http://tcm.zju.edu.cn/chd/ Oxford University Press 2013-07-01 /pmc/articles/PMC3697781/ /pubmed/23818526 http://dx.doi.org/10.1093/database/bat047 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Wu, Leihong
Li, Xiang
Yang, Jihong
Liu, Yufeng
Fan, Xiaohui
Cheng, Yiyu
CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title_full CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title_fullStr CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title_full_unstemmed CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title_short CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
title_sort chd@zju: a knowledgebase providing network-based research platform on coronary heart disease
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697781/
https://www.ncbi.nlm.nih.gov/pubmed/23818526
http://dx.doi.org/10.1093/database/bat047
work_keys_str_mv AT wuleihong chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease
AT lixiang chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease
AT yangjihong chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease
AT liuyufeng chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease
AT fanxiaohui chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease
AT chengyiyu chdzjuaknowledgebaseprovidingnetworkbasedresearchplatformoncoronaryheartdisease