Cargando…
Resolving Prokaryotic Taxonomy without rRNA: Longer Oligonucleotide Word Lengths Improve Genome and Metagenome Taxonomic Classification
Oligonucleotide signatures, especially tetranucleotide signatures, have been used as method for homology binning by exploiting an organism’s inherent biases towards the use of specific oligonucleotide words. Tetranucleotide signatures have been especially useful in environmental metagenomics samples...
Autores principales: | Alsop, Eric B., Raymond, Jason |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3698125/ https://www.ncbi.nlm.nih.gov/pubmed/23840870 http://dx.doi.org/10.1371/journal.pone.0067337 |
Ejemplares similares
-
Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals
por: Keller-Costa, T., et al.
Publicado: (2021) -
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification
por: Jaziri, Faouzi, et al.
Publicado: (2014) -
Full-Length 16S rRNA Gene Amplicon and Metagenome Taxonomic Profiling of Beneficial Microbes in Poultry and Swine Probiotic Product
por: Khongchatee, Adison, et al.
Publicado: (2022) -
16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
por: Chaudhary, Nikhil, et al.
Publicado: (2015) -
The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology
por: Jeong, Jinuk, et al.
Publicado: (2021)