Tasuke: a web-based visualization program for large-scale resequencing data

Summary: Because an enormous amount of sequence data is being collected, a method to effectively display sequence variation information is urgently needed. tasuke is a web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable f...

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Autores principales: Kumagai, Masahiko, Kim, Jungsok, Itoh, Ryutaro, Itoh, Takeshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3702261/
https://www.ncbi.nlm.nih.gov/pubmed/23749962
http://dx.doi.org/10.1093/bioinformatics/btt295
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author Kumagai, Masahiko
Kim, Jungsok
Itoh, Ryutaro
Itoh, Takeshi
author_facet Kumagai, Masahiko
Kim, Jungsok
Itoh, Ryutaro
Itoh, Takeshi
author_sort Kumagai, Masahiko
collection PubMed
description Summary: Because an enormous amount of sequence data is being collected, a method to effectively display sequence variation information is urgently needed. tasuke is a web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and read depths of multiple genomes, as well as annotations, can be shown simultaneously at various scales. We demonstrate the use of TASUKE by applying it to 50 rice and 100 human genome resequencing datasets. Availability and implementation: The tasuke program package and user manual are available from http://tasuke.dna.affrc.go.jp/. Contact: taitoh@affrc.go.jp
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spelling pubmed-37022612013-07-05 Tasuke: a web-based visualization program for large-scale resequencing data Kumagai, Masahiko Kim, Jungsok Itoh, Ryutaro Itoh, Takeshi Bioinformatics Applications Notes Summary: Because an enormous amount of sequence data is being collected, a method to effectively display sequence variation information is urgently needed. tasuke is a web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and read depths of multiple genomes, as well as annotations, can be shown simultaneously at various scales. We demonstrate the use of TASUKE by applying it to 50 rice and 100 human genome resequencing datasets. Availability and implementation: The tasuke program package and user manual are available from http://tasuke.dna.affrc.go.jp/. Contact: taitoh@affrc.go.jp Oxford University Press 2013-07-15 2013-06-07 /pmc/articles/PMC3702261/ /pubmed/23749962 http://dx.doi.org/10.1093/bioinformatics/btt295 Text en © The Author 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Kumagai, Masahiko
Kim, Jungsok
Itoh, Ryutaro
Itoh, Takeshi
Tasuke: a web-based visualization program for large-scale resequencing data
title Tasuke: a web-based visualization program for large-scale resequencing data
title_full Tasuke: a web-based visualization program for large-scale resequencing data
title_fullStr Tasuke: a web-based visualization program for large-scale resequencing data
title_full_unstemmed Tasuke: a web-based visualization program for large-scale resequencing data
title_short Tasuke: a web-based visualization program for large-scale resequencing data
title_sort tasuke: a web-based visualization program for large-scale resequencing data
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3702261/
https://www.ncbi.nlm.nih.gov/pubmed/23749962
http://dx.doi.org/10.1093/bioinformatics/btt295
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AT itohryutaro tasukeawebbasedvisualizationprogramforlargescaleresequencingdata
AT itohtakeshi tasukeawebbasedvisualizationprogramforlargescaleresequencingdata

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