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A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace

There is a need to reduce the number of cystoscopies on patients with haematuria. Presently there are no reliable biomarkers to screen for bladder cancer. In this paper, we evaluate a new simple in–house fabricated, GC-sensor device in the diagnosis of bladder cancer based on volatiles. Sensor outpu...

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Detalles Bibliográficos
Autores principales: Khalid, Tanzeela, White, Paul, De Lacy Costello, Ben, Persad, Raj, Ewen, Richard, Johnson, Emmanuel, Probert, Chris S., Ratcliffe, Norman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704674/
https://www.ncbi.nlm.nih.gov/pubmed/23861976
http://dx.doi.org/10.1371/journal.pone.0069602
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author Khalid, Tanzeela
White, Paul
De Lacy Costello, Ben
Persad, Raj
Ewen, Richard
Johnson, Emmanuel
Probert, Chris S.
Ratcliffe, Norman
author_facet Khalid, Tanzeela
White, Paul
De Lacy Costello, Ben
Persad, Raj
Ewen, Richard
Johnson, Emmanuel
Probert, Chris S.
Ratcliffe, Norman
author_sort Khalid, Tanzeela
collection PubMed
description There is a need to reduce the number of cystoscopies on patients with haematuria. Presently there are no reliable biomarkers to screen for bladder cancer. In this paper, we evaluate a new simple in–house fabricated, GC-sensor device in the diagnosis of bladder cancer based on volatiles. Sensor outputs from 98 urine samples were used to build and test diagnostic models. Samples were taken from 24 patients with transitional (urothelial) cell carcinoma (age 27-91 years, median 71 years) and 74 controls presenting with urological symptoms, but without a urological malignancy (age 29-86 years, median 64 years); results were analysed using two statistical approaches to assess the robustness of the methodology. A two-group linear discriminant analysis method using a total of 9 time points (which equates to 9 biomarkers) correctly assigned 24/24 (100%) of cancer cases and 70/74 (94.6%) controls. Under leave-one-out cross-validation 23/24 (95.8%) of cancer cases were correctly predicted with 69/74 (93.2%) of controls. For partial least squares discriminant analysis, the correct leave-one-out cross-validation prediction values were 95.8% (cancer cases) and 94.6% (controls). These data are an improvement on those reported by other groups studying headspace gases and also superior to current clinical techniques. This new device shows potential for the diagnosis of bladder cancer, but the data must be reproduced in a larger study.
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spelling pubmed-37046742013-07-16 A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace Khalid, Tanzeela White, Paul De Lacy Costello, Ben Persad, Raj Ewen, Richard Johnson, Emmanuel Probert, Chris S. Ratcliffe, Norman PLoS One Research Article There is a need to reduce the number of cystoscopies on patients with haematuria. Presently there are no reliable biomarkers to screen for bladder cancer. In this paper, we evaluate a new simple in–house fabricated, GC-sensor device in the diagnosis of bladder cancer based on volatiles. Sensor outputs from 98 urine samples were used to build and test diagnostic models. Samples were taken from 24 patients with transitional (urothelial) cell carcinoma (age 27-91 years, median 71 years) and 74 controls presenting with urological symptoms, but without a urological malignancy (age 29-86 years, median 64 years); results were analysed using two statistical approaches to assess the robustness of the methodology. A two-group linear discriminant analysis method using a total of 9 time points (which equates to 9 biomarkers) correctly assigned 24/24 (100%) of cancer cases and 70/74 (94.6%) controls. Under leave-one-out cross-validation 23/24 (95.8%) of cancer cases were correctly predicted with 69/74 (93.2%) of controls. For partial least squares discriminant analysis, the correct leave-one-out cross-validation prediction values were 95.8% (cancer cases) and 94.6% (controls). These data are an improvement on those reported by other groups studying headspace gases and also superior to current clinical techniques. This new device shows potential for the diagnosis of bladder cancer, but the data must be reproduced in a larger study. Public Library of Science 2013-07-08 /pmc/articles/PMC3704674/ /pubmed/23861976 http://dx.doi.org/10.1371/journal.pone.0069602 Text en © 2013 Khalid et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Khalid, Tanzeela
White, Paul
De Lacy Costello, Ben
Persad, Raj
Ewen, Richard
Johnson, Emmanuel
Probert, Chris S.
Ratcliffe, Norman
A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title_full A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title_fullStr A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title_full_unstemmed A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title_short A Pilot Study Combining a GC-Sensor Device with a Statistical Model for the Identification of Bladder Cancer from Urine Headspace
title_sort pilot study combining a gc-sensor device with a statistical model for the identification of bladder cancer from urine headspace
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704674/
https://www.ncbi.nlm.nih.gov/pubmed/23861976
http://dx.doi.org/10.1371/journal.pone.0069602
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