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Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize
BACKGROUND: Calcium-dependent protein kinases (CDPKs) have been shown to play important roles in various physiological processes, including plant growth and development, abiotic and biotic stress responses and plant hormone signaling in plants. RESULTS: In this study, we performed a bioinformatics a...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704972/ https://www.ncbi.nlm.nih.gov/pubmed/23815483 http://dx.doi.org/10.1186/1471-2164-14-433 |
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author | Kong, Xiangpei Lv, Wei Jiang, Shanshan Zhang, Dan Cai, Guohua Pan, Jiaowen Li, Dequan |
author_facet | Kong, Xiangpei Lv, Wei Jiang, Shanshan Zhang, Dan Cai, Guohua Pan, Jiaowen Li, Dequan |
author_sort | Kong, Xiangpei |
collection | PubMed |
description | BACKGROUND: Calcium-dependent protein kinases (CDPKs) have been shown to play important roles in various physiological processes, including plant growth and development, abiotic and biotic stress responses and plant hormone signaling in plants. RESULTS: In this study, we performed a bioinformatics analysis of the entire maize genome and identified 40 CDPK genes. Phylogenetic analysis indicated that 40 ZmCPKs can be divided into four groups. Most maize CDPK genes exhibited different expression levels in different tissues and developmental stages. Twelve CDPK genes were selected to respond to various stimuli, including salt, drought and cold, as well as ABA and H(2)O(2). Expression analyses suggested that maize CDPK genes are important components of maize development and multiple transduction pathways. CONCLUSION: Here, we present a genome-wide analysis of the CDPK gene family in maize for the first time, and this genomic analysis of maize CDPK genes provides the first step towards a functional study of this gene family in maize. |
format | Online Article Text |
id | pubmed-3704972 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-37049722013-07-10 Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize Kong, Xiangpei Lv, Wei Jiang, Shanshan Zhang, Dan Cai, Guohua Pan, Jiaowen Li, Dequan BMC Genomics Research Article BACKGROUND: Calcium-dependent protein kinases (CDPKs) have been shown to play important roles in various physiological processes, including plant growth and development, abiotic and biotic stress responses and plant hormone signaling in plants. RESULTS: In this study, we performed a bioinformatics analysis of the entire maize genome and identified 40 CDPK genes. Phylogenetic analysis indicated that 40 ZmCPKs can be divided into four groups. Most maize CDPK genes exhibited different expression levels in different tissues and developmental stages. Twelve CDPK genes were selected to respond to various stimuli, including salt, drought and cold, as well as ABA and H(2)O(2). Expression analyses suggested that maize CDPK genes are important components of maize development and multiple transduction pathways. CONCLUSION: Here, we present a genome-wide analysis of the CDPK gene family in maize for the first time, and this genomic analysis of maize CDPK genes provides the first step towards a functional study of this gene family in maize. BioMed Central 2013-07-01 /pmc/articles/PMC3704972/ /pubmed/23815483 http://dx.doi.org/10.1186/1471-2164-14-433 Text en Copyright © 2013 Kong et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Kong, Xiangpei Lv, Wei Jiang, Shanshan Zhang, Dan Cai, Guohua Pan, Jiaowen Li, Dequan Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title | Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title_full | Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title_fullStr | Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title_full_unstemmed | Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title_short | Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
title_sort | genome-wide identification and expression analysis of calcium-dependent protein kinase in maize |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704972/ https://www.ncbi.nlm.nih.gov/pubmed/23815483 http://dx.doi.org/10.1186/1471-2164-14-433 |
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