Cargando…

A guide to best practices for Gene Ontology (GO) manual annotation

The Gene Ontology Consortium (GOC) is a community-based bioinformatics project that classifies gene product function through the use of structured controlled vocabularies. A fundamental application of the Gene Ontology (GO) is in the creation of gene product annotations, evidence-based associations...

Descripción completa

Detalles Bibliográficos
Autores principales:	Balakrishnan, Rama, Harris, Midori A., Huntley, Rachael, Van Auken, Kimberly, Cherry, J. Michael
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2013
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706743/ https://www.ncbi.nlm.nih.gov/pubmed/23842463 http://dx.doi.org/10.1093/database/bat054

Ejemplares similares

Guidelines for the functional annotation of microRNAs using the Gene Ontology
por: Huntley, Rachael P., et al.
Publicado: (2016)

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations
por: Park, Julie, et al.
Publicado: (2012)

Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt
por: Huntley, Rachael P, et al.
Publicado: (2014)

Annotation of gene product function from high-throughput studies using the Gene Ontology
por: Attrill, Helen, et al.
Publicado: (2019)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
por: Wood, Valerie, et al.
Publicado: (2020)

A method for increasing expressivity of Gene Ontology annotations using a compositional approach
por: Huntley, Rachael P, et al.
Publicado: (2014)

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study
por: Costanzo, Maria C., et al.
Publicado: (2011)

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort
por: Tripathi, Sushil, et al.
Publicado: (2013)

The GOA database: Gene Ontology annotation updates for 2015
por: Huntley, Rachael P., et al.
Publicado: (2014)

The GOA database in 2009—an integrated Gene Ontology Annotation resource
por: Barrell, Daniel, et al.
Publicado: (2009)

CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
por: Reijnders, Maarten J. M. F., et al.
Publicado: (2022)

QuickGO: a web-based tool for Gene Ontology searching
por: Binns, David, et al.
Publicado: (2009)

QuickGO: a user tutorial for the web-based Gene Ontology browser
por: Huntley, Rachael P., et al.
Publicado: (2009)

Use of Gene Ontology Annotation to understand the peroxisome proteome in humans
por: Mutowo-Meullenet, Prudence, et al.
Publicado: (2013)

Gene Ontology annotations at SGD: new data sources and annotation methods
por: Hong, Eurie L., et al.
Publicado: (2008)

Sequence Ontology Annotation Guide
por: Eilbeck, Karen, et al.
Publicado: (2004)

Variation ontology: annotator guide
por: Vihinen, Mauno
Publicado: (2014)

AmiGO: online access to ontology and annotation data
por: Carbon, Seth, et al.
Publicado: (2009)

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation
por: Van Auken, Kimberly, et al.
Publicado: (2009)

goSTAG: gene ontology subtrees to tag and annotate genes within a set
por: Bennett, Brian D., et al.
Publicado: (2017)

Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database
por: Drabkin, Harold J., et al.
Publicado: (2012)

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
por: Jupp, Simon, et al.
Publicado: (2012)

On gene ontology and function annotation
por: Pal, Debnath
Publicado: (2006)

Gene Ontology Annotations and Resources
Publicado: (2013)

EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
por: Zhou, Xin, et al.
Publicado: (2007)

SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment
por: Wang, Siyue, et al.
Publicado: (2022)

Standardized description of scientific evidence using the Evidence Ontology (ECO)
por: Chibucos, Marcus C., et al.
Publicado: (2014)

Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology
por: Hu, Yang, et al.
Publicado: (2016)

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
por: Kuppuswamy, Usha, et al.
Publicado: (2014)

The Gene Ontology (GO) project in 2006
Publicado: (2006)

Gene Ontology Consortium: going forward
Publicado: (2014)

The Gene Ontology Annotation (GOA) Project—Application of GO in SWISS-PROT, TrEMBL and InterPro
por: Camon, Evelyn, et al.
Publicado: (2003)

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
por: Bindea, Gabriela, et al.
Publicado: (2009)

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology
por: Ramšak, Živa, et al.
Publicado: (2014)

Representing Kidney Development Using the Gene Ontology
por: Alam-Faruque, Yasmin, et al.
Publicado: (2014)

Capturing heart valve development with Gene Ontology
por: Ahmed, Saadullah H., et al.
Publicado: (2023)

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
por: Doğan, Tunca
Publicado: (2018)

How the gene ontology evolves
por: Leonelli, Sabina, et al.
Publicado: (2011)

Quality of Computationally Inferred Gene Ontology Annotations
por: Škunca, Nives, et al.
Publicado: (2012)

Computational algorithms to predict Gene Ontology annotations
por: Pinoli, Pietro, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_0utctnqbnh2jkq4390q1mu0iei