Cargando…

User guide for mapping-by-sequencing in Arabidopsis

Mapping-by-sequencing combines genetic mapping with whole-genome sequencing in order to accelerate mutant identification. However, application of mapping-by-sequencing requires decisions on various practical settings on the experimental design that are not intuitively answered. Following an experime...

Descripción completa

Detalles Bibliográficos
Autores principales:	James, Geo Velikkakam, Patel, Vipul, Nordström, Karl JV, Klasen, Jonas R, Salomé, Patrice A, Weigel, Detlef, Schneeberger, Korbinian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706810/ https://www.ncbi.nlm.nih.gov/pubmed/23773572 http://dx.doi.org/10.1186/gb-2013-14-6-r61

Ejemplares similares

Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping
por: Rowan, Beth A., et al.
Publicado: (2015)

The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana
por: Wijnker, Erik, et al.
Publicado: (2013)

The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana
por: Jiao, Wen-Biao, et al.
Publicado: (2020)

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
por: Laubinger, Sascha, et al.
Publicado: (2008)

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data
por: Rawat, Vimal, et al.
Publicado: (2015)

Plant Genetic Archaeology: Whole-Genome Sequencing Reveals the Pedigree of a Classical Trisomic Line
por: Salomé, Patrice A., et al.
Publicado: (2014)

Genetic Architecture of Flowering-Time Variation in Arabidopsis thaliana
por: Salomé, Patrice A., et al.
Publicado: (2011)

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage
por: Hagmann, Jörg, et al.
Publicado: (2015)

Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity
por: Stuttmann, Johannes, et al.
Publicado: (2016)

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data
por: Jiao, Wen-Biao, et al.
Publicado: (2017)

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes
por: Campoy, José A., et al.
Publicado: (2020)

LOCAS – A Low Coverage Assembly Tool for Resequencing Projects
por: Klein, Juliane D., et al.
Publicado: (2011)

The 1001 Genomes Project for Arabidopsis thaliana
por: Weigel, Detlef, et al.
Publicado: (2009)

Next-generation forward genetic screens: using simulated data to improve the design of mapping-by-sequencing experiments in Arabidopsis
por: Wilson-Sánchez, David, et al.
Publicado: (2019)

Simultaneous alignment of short reads against multiple genomes
por: Schneeberger, Korbinian, et al.
Publicado: (2009)

Circadian clock adjustment to plant iron status depends on chloroplast and phytochrome function
por: Salomé, Patrice A, et al.
Publicado: (2013)

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis
por: Ashelford, Kevin, et al.
Publicado: (2011)

Mutation mapping and identification by whole-genome sequencing
por: Leshchiner, Ignaty, et al.
Publicado: (2012)

Mapping-by-sequencing accelerates forward genetics in barley
por: Mascher, Martin, et al.
Publicado: (2014)

Whole genome transcriptome polymorphisms in Arabidopsis thaliana
por: Zhang, Xu, et al.
Publicado: (2008)

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics
por: Jiao, Wen-Biao, et al.
Publicado: (2020)

Transposon Variants and Their Effects on Gene Expression in Arabidopsis
por: Wang, Xi, et al.
Publicado: (2013)

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features
por: Rowan, Beth A., et al.
Publicado: (2019)

Sniper: improved SNP discovery by multiply mapping deep sequenced reads
por: Simola, Daniel F, et al.
Publicado: (2011)

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast
por: Liachko, Ivan, et al.
Publicado: (2013)

Antibody validation for Western blot: By the user, for the user
por: Pillai-Kastoori, Lakshmi, et al.
Publicado: (2020)

Sensitive mapping of recombination hotspots using sequencing-based detection of ssDNA
por: Khil, Pavel P., et al.
Publicado: (2012)

Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors
por: Moriyama, Etsuko N, et al.
Publicado: (2006)

Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana
por: Wille, Anja, et al.
Publicado: (2004)

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana
por: Kankainen, Matti, et al.
Publicado: (2006)

DENA: training an authentic neural network model using Nanopore sequencing data of Arabidopsis transcripts for detection and quantification of N(6)-methyladenosine on RNA
por: Qin, Hang, et al.
Publicado: (2022)

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
por: Bzikadze, Andrey V., et al.
Publicado: (2022)

A multi-marker association method for genome-wide association studies without the need for population structure correction
por: Klasen, Jonas R., et al.
Publicado: (2016)

Potent Induction of Arabidopsis thaliana Flowering by Elevated Growth Temperature
por: Balasubramanian, Sureshkumar, et al.
Publicado: (2006)

INSERT-seq enables high-resolution mapping of genomically integrated DNA using Nanopore sequencing
por: Ivančić, Dimitrije, et al.
Publicado: (2022)

Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana
por: Dinh, Thanh Theresa, et al.
Publicado: (2013)

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines
por: Balasubramanian, Sureshkumar, et al.
Publicado: (2009)

PREFERRED REPORTING ITEMS FOR STUDIES MAPPING ONTO PREFERENCE-BASED OUTCOME MEASURES: THE MAPS STATEMENT
por: Petrou, Stavros, et al.
Publicado: (2015)

Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing
por: Zhu, Shijia, et al.
Publicado: (2018)

Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
por: Qi, Yiping, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_sgt0h7i5tm6tgirsqtftbugm29