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Genome-Wide Association Study of Serum Selenium Concentrations

Selenium is an essential trace element and circulating selenium concentrations have been associated with a wide range of diseases. Candidate gene studies suggest that circulating selenium concentrations may be impacted by genetic variation; however, no study has comprehensively investigated this hyp...

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Autores principales: Gong, Jian, Hsu, Li, Harrison, Tabitha, King, Irena B., Stürup, Stefan, Song, Xiaoling, Duggan, David, Liu, Yan, Hutter, Carolyn, Chanock, Stephen J., Eaton, Charles B., Marshall, James R., Peters, Ulrike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708345/
https://www.ncbi.nlm.nih.gov/pubmed/23698163
http://dx.doi.org/10.3390/nu5051706
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author Gong, Jian
Hsu, Li
Harrison, Tabitha
King, Irena B.
Stürup, Stefan
Song, Xiaoling
Duggan, David
Liu, Yan
Hutter, Carolyn
Chanock, Stephen J.
Eaton, Charles B.
Marshall, James R.
Peters, Ulrike
author_facet Gong, Jian
Hsu, Li
Harrison, Tabitha
King, Irena B.
Stürup, Stefan
Song, Xiaoling
Duggan, David
Liu, Yan
Hutter, Carolyn
Chanock, Stephen J.
Eaton, Charles B.
Marshall, James R.
Peters, Ulrike
author_sort Gong, Jian
collection PubMed
description Selenium is an essential trace element and circulating selenium concentrations have been associated with a wide range of diseases. Candidate gene studies suggest that circulating selenium concentrations may be impacted by genetic variation; however, no study has comprehensively investigated this hypothesis. Therefore, we conducted a two-stage genome-wide association study to identify genetic variants associated with serum selenium concentrations in 1203 European descents from two cohorts: the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening and the Women’s Health Initiative (WHI). We tested association between 2,474,333 single nucleotide polymorphisms (SNPs) and serum selenium concentrations using linear regression models. In the first stage (PLCO) 41 SNPs clustered in 15 regions had p < 1 × 10(−5). None of these 41 SNPs reached the significant threshold (p = 0.05/15 regions = 0.003) in the second stage (WHI). Three SNPs had p < 0.05 in the second stage (rs1395479 and rs1506807 in 4q34.3/AGA-NEIL3; and rs891684 in 17q24.3/SLC39A11) and had p between 2.62 × 10(−7) and 4.04 × 10(−7) in the combined analysis (PLCO + WHI). Additional studies are needed to replicate these findings. Identification of genetic variation that impacts selenium concentrations may contribute to a better understanding of which genes regulate circulating selenium concentrations.
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spelling pubmed-37083452013-07-11 Genome-Wide Association Study of Serum Selenium Concentrations Gong, Jian Hsu, Li Harrison, Tabitha King, Irena B. Stürup, Stefan Song, Xiaoling Duggan, David Liu, Yan Hutter, Carolyn Chanock, Stephen J. Eaton, Charles B. Marshall, James R. Peters, Ulrike Nutrients Article Selenium is an essential trace element and circulating selenium concentrations have been associated with a wide range of diseases. Candidate gene studies suggest that circulating selenium concentrations may be impacted by genetic variation; however, no study has comprehensively investigated this hypothesis. Therefore, we conducted a two-stage genome-wide association study to identify genetic variants associated with serum selenium concentrations in 1203 European descents from two cohorts: the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening and the Women’s Health Initiative (WHI). We tested association between 2,474,333 single nucleotide polymorphisms (SNPs) and serum selenium concentrations using linear regression models. In the first stage (PLCO) 41 SNPs clustered in 15 regions had p < 1 × 10(−5). None of these 41 SNPs reached the significant threshold (p = 0.05/15 regions = 0.003) in the second stage (WHI). Three SNPs had p < 0.05 in the second stage (rs1395479 and rs1506807 in 4q34.3/AGA-NEIL3; and rs891684 in 17q24.3/SLC39A11) and had p between 2.62 × 10(−7) and 4.04 × 10(−7) in the combined analysis (PLCO + WHI). Additional studies are needed to replicate these findings. Identification of genetic variation that impacts selenium concentrations may contribute to a better understanding of which genes regulate circulating selenium concentrations. MDPI 2013-05-21 /pmc/articles/PMC3708345/ /pubmed/23698163 http://dx.doi.org/10.3390/nu5051706 Text en © 2013 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Gong, Jian
Hsu, Li
Harrison, Tabitha
King, Irena B.
Stürup, Stefan
Song, Xiaoling
Duggan, David
Liu, Yan
Hutter, Carolyn
Chanock, Stephen J.
Eaton, Charles B.
Marshall, James R.
Peters, Ulrike
Genome-Wide Association Study of Serum Selenium Concentrations
title Genome-Wide Association Study of Serum Selenium Concentrations
title_full Genome-Wide Association Study of Serum Selenium Concentrations
title_fullStr Genome-Wide Association Study of Serum Selenium Concentrations
title_full_unstemmed Genome-Wide Association Study of Serum Selenium Concentrations
title_short Genome-Wide Association Study of Serum Selenium Concentrations
title_sort genome-wide association study of serum selenium concentrations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708345/
https://www.ncbi.nlm.nih.gov/pubmed/23698163
http://dx.doi.org/10.3390/nu5051706
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