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lncRNome: a comprehensive knowledgebase of human long noncoding RNAs

The advent of high-throughput genome scale technologies has enabled us to unravel a large amount of the previously unknown transcriptionally active regions of the genome. Recent genome-wide studies have provided annotations of a large repertoire of various classes of noncoding transcripts. Long nonc...

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Autores principales: Bhartiya, Deeksha, Pal, Koustav, Ghosh, Sourav, Kapoor, Shruti, Jalali, Saakshi, Panwar, Bharat, Jain, Sakshi, Sati, Satish, Sengupta, Shantanu, Sachidanandan, Chetana, Raghava, Gajendra Pal Singh, Sivasubbu, Sridhar, Scaria, Vinod
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708617/
https://www.ncbi.nlm.nih.gov/pubmed/23846593
http://dx.doi.org/10.1093/database/bat034
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author Bhartiya, Deeksha
Pal, Koustav
Ghosh, Sourav
Kapoor, Shruti
Jalali, Saakshi
Panwar, Bharat
Jain, Sakshi
Sati, Satish
Sengupta, Shantanu
Sachidanandan, Chetana
Raghava, Gajendra Pal Singh
Sivasubbu, Sridhar
Scaria, Vinod
author_facet Bhartiya, Deeksha
Pal, Koustav
Ghosh, Sourav
Kapoor, Shruti
Jalali, Saakshi
Panwar, Bharat
Jain, Sakshi
Sati, Satish
Sengupta, Shantanu
Sachidanandan, Chetana
Raghava, Gajendra Pal Singh
Sivasubbu, Sridhar
Scaria, Vinod
author_sort Bhartiya, Deeksha
collection PubMed
description The advent of high-throughput genome scale technologies has enabled us to unravel a large amount of the previously unknown transcriptionally active regions of the genome. Recent genome-wide studies have provided annotations of a large repertoire of various classes of noncoding transcripts. Long noncoding RNAs (lncRNAs) form a major proportion of these novel annotated noncoding transcripts, and presently known to be involved in a number of functionally distinct biological processes. Over 18 000 transcripts are presently annotated as lncRNA, and encompass previously annotated classes of noncoding transcripts including large intergenic noncoding RNA, antisense RNA and processed pseudogenes. There is a significant gap in the resources providing a stable annotation, cross-referencing and biologically relevant information. lncRNome has been envisioned with the aim of filling this gap by integrating annotations on a wide variety of biologically significant information into a comprehensive knowledgebase. To the best of our knowledge, lncRNome is one of the largest and most comprehensive resources for lncRNAs. Database URL: http://genome.igib.res.in/lncRNome
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spelling pubmed-37086172013-07-11 lncRNome: a comprehensive knowledgebase of human long noncoding RNAs Bhartiya, Deeksha Pal, Koustav Ghosh, Sourav Kapoor, Shruti Jalali, Saakshi Panwar, Bharat Jain, Sakshi Sati, Satish Sengupta, Shantanu Sachidanandan, Chetana Raghava, Gajendra Pal Singh Sivasubbu, Sridhar Scaria, Vinod Database (Oxford) Original Article The advent of high-throughput genome scale technologies has enabled us to unravel a large amount of the previously unknown transcriptionally active regions of the genome. Recent genome-wide studies have provided annotations of a large repertoire of various classes of noncoding transcripts. Long noncoding RNAs (lncRNAs) form a major proportion of these novel annotated noncoding transcripts, and presently known to be involved in a number of functionally distinct biological processes. Over 18 000 transcripts are presently annotated as lncRNA, and encompass previously annotated classes of noncoding transcripts including large intergenic noncoding RNA, antisense RNA and processed pseudogenes. There is a significant gap in the resources providing a stable annotation, cross-referencing and biologically relevant information. lncRNome has been envisioned with the aim of filling this gap by integrating annotations on a wide variety of biologically significant information into a comprehensive knowledgebase. To the best of our knowledge, lncRNome is one of the largest and most comprehensive resources for lncRNAs. Database URL: http://genome.igib.res.in/lncRNome Oxford University Press 2013-07-11 /pmc/articles/PMC3708617/ /pubmed/23846593 http://dx.doi.org/10.1093/database/bat034 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Bhartiya, Deeksha
Pal, Koustav
Ghosh, Sourav
Kapoor, Shruti
Jalali, Saakshi
Panwar, Bharat
Jain, Sakshi
Sati, Satish
Sengupta, Shantanu
Sachidanandan, Chetana
Raghava, Gajendra Pal Singh
Sivasubbu, Sridhar
Scaria, Vinod
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title_full lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title_fullStr lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title_full_unstemmed lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title_short lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
title_sort lncrnome: a comprehensive knowledgebase of human long noncoding rnas
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708617/
https://www.ncbi.nlm.nih.gov/pubmed/23846593
http://dx.doi.org/10.1093/database/bat034
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