Cargando…

DoSA: Database of Structural Alignments

Protein structure alignment is a crucial step in protein structure–function analysis. Despite the advances in protein structure alignment algorithms, some of the local conformationally similar regions are mislabeled as structurally variable regions (SVRs). These regions are not well superimposed bec...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mahajan, Swapnil, Agarwal, Garima, Iftekhar, Mohammed, Offmann, Bernard, de Brevern, Alexandre G., Srinivasan, Narayanaswamy
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2013
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708618/ https://www.ncbi.nlm.nih.gov/pubmed/23846594 http://dx.doi.org/10.1093/database/bat048

Ejemplares similares

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks
por: Agarwal, Garima, et al.
Publicado: (2011)

Knowledge-based prediction of protein backbone conformation using a structural alphabet
por: Vetrivel, Iyanar, et al.
Publicado: (2017)

Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins
por: Swapna, Lakshmipuram S, et al.
Publicado: (2012)

Postprandial glycaemic response of foxtail millet dosa in comparison to a rice dosa in patients with type 2 diabetes
por: Narayanan, Janani, et al.
Publicado: (2016)

iPBA: a tool for protein structure comparison using sequence alignment strategies
por: Gelly, Jean-Christophe, et al.
Publicado: (2011)

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations
por: Sandhya, Sankaran, et al.
Publicado: (2008)

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains
por: Vishwanath, Sneha, et al.
Publicado: (2018)

AlignHUSH: Alignment of HMMs using structure and hydrophobicity information
por: Krishnadev, Oruganty, et al.
Publicado: (2011)

Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes
por: Joseph, Agnel Praveen, et al.
Publicado: (2012)

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet
por: Tyagi, M., et al.
Publicado: (2006)

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function
por: Sandhya, Sankaran, et al.
Publicado: (2009)

Probiotic Potential Lacticaseibacillus casei and Limosilactobacillus fermentum Strains Isolated from Dosa Batter Inhibit α-Glucosidase and α-Amylase Enzymes
por: Kumari V. B., Chandana, et al.
Publicado: (2022)

Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold
por: Agarwal, Garima, et al.
Publicado: (2009)

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
por: Craveur, Pierrick, et al.
Publicado: (2014)

PolyprOnline: polyproline helix II and secondary structure assignment database
por: Chebrek, Romain, et al.
Publicado: (2014)

Structural Integrity of the Greek Key Motif in βγ-Crystallins Is Vital for Central Eye Lens Transparency
por: Vendra, Venkata Pulla Rao, et al.
Publicado: (2013)

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach
por: Faure, Guilhem, et al.
Publicado: (2019)

Effect of bleaching and variety on the physico-chemical, functional and rheological properties of three new Irish potatoes (Cipira, Pamela and Dosa) flours grown in the locality of Dschang (West region of Cameroon)
por: Klang, Julie Mathilde, et al.
Publicado: (2019)

EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins
por: Ghosh, Pritha, et al.
Publicado: (2019)

Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families
por: Thangudu, Ratna R, et al.
Publicado: (2008)

Structurer sa pensée, structurer sa phrase : techniques d'expression orale et écrite, formation continue niveau supérieur /
por: Niquet, Gilberte
Publicado: (1987)

Development and validation of the INappropriate solid oral dosaGE form modification aSsessmenT (INGEST) Algorithm using data of patients with medication dysphagia from a neurology ward and nursing home in Singapore
por: Tan, Poh Leng, et al.
Publicado: (2022)

DMAPS: a database of multiple alignments for protein structures
por: Guda, Chittibabu, et al.
Publicado: (2006)

Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet
por: de Brevern, Alexandre G.
Publicado: (2020)

Flexible Structural Neighborhood—a database of protein structural similarities and alignments
por: Li, Zhanwen, et al.
Publicado: (2006)

Sa1053: OUTCOMES OF HOSPITALIZED COVID-19 PATIENTS WITH INFLAMMATORY BOWEL DISEASE: A NATIONAL DATABASE STUDY
por: Melquist, Stephanie J., et al.
Publicado: (2022)

mTM-align: a server for fast protein structure database search and multiple protein structure alignment
por: Dong, Runze, et al.
Publicado: (2018)

Prediction of Tensile Strength in Friction Welding Joins Made of SA213 Tube to SA387 Tube Plate through Optimization Techniques
por: S, Senthil Kumaran, et al.
Publicado: (2019)

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins
por: Kalmankar, Neha V, et al.
Publicado: (2022)

Analysing the Structural Effect of Point Mutations of Cytotoxic Necrotizing Factor 1 (CNF1) on Lu/BCAM Adhesion Glycoprotein Association
por: de Brevern, Alexandre G.
Publicado: (2018)

Use of a structural alphabet for analysis of short loops connecting repetitive structures
por: Fourrier, Laurent, et al.
Publicado: (2004)

NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection
por: Mudgal, Richa, et al.
Publicado: (2014)

Structural and Dynamic Differences between Calreticulin Mutants Associated with Essential Thrombocythemia
por: Radjasandirane, Ragousandirane, et al.
Publicado: (2023)

Structural Design and Analysis of the RHOA-ARHGEF1 Binding Mode: Challenges and Applications for Protein-Protein Interface Prediction
por: Gheyouche, Ennys, et al.
Publicado: (2021)

PASS2: an automated database of protein alignments organised as structural superfamilies
por: Bhaduri, Anirban, et al.
Publicado: (2004)

Société nouvelle, sa nécessité.
por: Colins, Jean Guillaume César Alexandre Hippolyte, baron de, 1783-1859. [from old catalog]
Publicado: (1857)

Heuristic Pairwise Alignment in Database Environments
por: Lipták, Panna, et al.
Publicado: (2022)

TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
por: Leslin, Chesley M., et al.
Publicado: (2007)

Stability of domain structures in multi-domain proteins
por: Bhaskara, Ramachandra M., et al.
Publicado: (2011)

SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array
por: Wang, Ziyuan, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_skg633h70e00ff4ulvnup5qqci