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Generalized linear mixed models can detect unimodal species-environment relationships
Niche theory predicts that species occurrence and abundance show non-linear, unimodal relationships with respect to environmental gradients. Unimodal models, such as the Gaussian (logistic) model, are however more difficult to fit to data than linear ones, particularly in a multi-species context in...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3709111/ https://www.ncbi.nlm.nih.gov/pubmed/23862108 http://dx.doi.org/10.7717/peerj.95 |
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author | Jamil, Tahira ter Braak, Cajo J.F. |
author_facet | Jamil, Tahira ter Braak, Cajo J.F. |
author_sort | Jamil, Tahira |
collection | PubMed |
description | Niche theory predicts that species occurrence and abundance show non-linear, unimodal relationships with respect to environmental gradients. Unimodal models, such as the Gaussian (logistic) model, are however more difficult to fit to data than linear ones, particularly in a multi-species context in ordination, with trait modulated response and when species phylogeny and species traits must be taken into account. Adding squared terms to a linear model is a possibility but gives uninterpretable parameters. This paper explains why and when generalized linear mixed models, even without squared terms, can effectively analyse unimodal data and also presents a graphical tool and statistical test to test for unimodal response while fitting just the generalized linear mixed model. The R-code for this is supplied in Supplemental Information 1. |
format | Online Article Text |
id | pubmed-3709111 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-37091112013-07-16 Generalized linear mixed models can detect unimodal species-environment relationships Jamil, Tahira ter Braak, Cajo J.F. PeerJ Ecology Niche theory predicts that species occurrence and abundance show non-linear, unimodal relationships with respect to environmental gradients. Unimodal models, such as the Gaussian (logistic) model, are however more difficult to fit to data than linear ones, particularly in a multi-species context in ordination, with trait modulated response and when species phylogeny and species traits must be taken into account. Adding squared terms to a linear model is a possibility but gives uninterpretable parameters. This paper explains why and when generalized linear mixed models, even without squared terms, can effectively analyse unimodal data and also presents a graphical tool and statistical test to test for unimodal response while fitting just the generalized linear mixed model. The R-code for this is supplied in Supplemental Information 1. PeerJ Inc. 2013-07-09 /pmc/articles/PMC3709111/ /pubmed/23862108 http://dx.doi.org/10.7717/peerj.95 Text en © 2013 Jamil and ter Braak http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Ecology Jamil, Tahira ter Braak, Cajo J.F. Generalized linear mixed models can detect unimodal species-environment relationships |
title | Generalized linear mixed models can detect unimodal species-environment
relationships |
title_full | Generalized linear mixed models can detect unimodal species-environment
relationships |
title_fullStr | Generalized linear mixed models can detect unimodal species-environment
relationships |
title_full_unstemmed | Generalized linear mixed models can detect unimodal species-environment
relationships |
title_short | Generalized linear mixed models can detect unimodal species-environment
relationships |
title_sort | generalized linear mixed models can detect unimodal species-environment
relationships |
topic | Ecology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3709111/ https://www.ncbi.nlm.nih.gov/pubmed/23862108 http://dx.doi.org/10.7717/peerj.95 |
work_keys_str_mv | AT jamiltahira generalizedlinearmixedmodelscandetectunimodalspeciesenvironmentrelationships AT terbraakcajojf generalizedlinearmixedmodelscandetectunimodalspeciesenvironmentrelationships |