Cargando…

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome

BACKGROUND: Catfish has a male-heterogametic (XY) sex determination system, but genes involved in gonadogenesis, spermatogenesis, testicular determination, and sex determination are poorly understood. As a first step of understanding the transcriptome of the testis, here, we conducted RNA-Seq analys...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Fanyue, Liu, Shikai, Gao, Xiaoyu, Jiang, Yanliang, Perera, Dayan, Wang, Xiuli, Li, Chao, Sun, Luyang, Zhang, Jiaren, Kaltenboeck, Ludmilla, Dunham, Rex, Liu, Zhanjiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3709890/ https://www.ncbi.nlm.nih.gov/pubmed/23874634 http://dx.doi.org/10.1371/journal.pone.0068452

Ejemplares similares

Development of the catfish 250K SNP array for genome-wide association studies
por: Liu, Shikai, et al.
Publicado: (2014)

Identification and Analysis of Genome-Wide SNPs Provide Insight into Signatures of Selection and Domestication in Channel Catfish (Ictalurus punctatus)
por: Sun, Luyang, et al.
Publicado: (2014)

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding
por: Jiang, Yanliang, et al.
Publicado: (2013)

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
por: Liu, Shikai, et al.
Publicado: (2011)

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
por: Liu, Shikai, et al.
Publicado: (2012)

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish
por: Wang, Ruijia, et al.
Publicado: (2013)

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species
por: Jiang, Yanliang, et al.
Publicado: (2013)

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance
por: Geng, Xin, et al.
Publicado: (2015)

A pilot study for channel catfish whole genome sequencing and de novo assembly
por: Jiang, Yanliang, et al.
Publicado: (2011)

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish
por: Li, Yun, et al.
Publicado: (2015)

The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus)
por: Yuan, Zihao, et al.
Publicado: (2018)

Second-Generation Genetic Linkage Map of Catfish and Its Integration with the BAC-Based Physical Map
por: Ninwichian, Parichart, et al.
Publicado: (2012)

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
por: Liu, Zhanjiang, et al.
Publicado: (2016)

The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish
por: Bao, Lisui, et al.
Publicado: (2019)

Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus)
por: Chen, Fei, et al.
Publicado: (2010)

Genome-Wide Identification of Hsp40 Genes in Channel Catfish and Their Regulated Expression after Bacterial Infection
por: Song, Lin, et al.
Publicado: (2014)

Identification of an Epigenetically Marked Locus within the Sex Determination Region of Channel Catfish
por: Yang, Yujia, et al.
Publicado: (2022)

Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements
por: Zhang, Yu, et al.
Publicado: (2013)

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish
por: Geng, Xin, et al.
Publicado: (2016)

Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish
por: Wang, Wenwen, et al.
Publicado: (2022)

Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes
por: Liu, Shikai, et al.
Publicado: (2013)

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs
por: Li, Ping, et al.
Publicado: (2007)

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation
por: Li, Ning, et al.
Publicado: (2018)

Effects of CRISPR/Cas9 dosage on TICAM1 and RBL gene mutation rate, embryonic development, hatchability and fry survival in channel catfish
por: Elaswad, Ahmed, et al.
Publicado: (2018)

Effect of Nutrient Restriction and Re-Feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus)
por: Preziosa, Elena, et al.
Publicado: (2013)

Sex-Biased miRNAs in Gonad and Their Potential Roles for Testis Development in Yellow Catfish
por: Jing, Jing, et al.
Publicado: (2014)

Comparison of growth performance among channel-blue hybrid catfish, ccGH transgenic channel catfish, and channel catfish in a tank culture system
por: Abass, Nermeen Y., et al.
Publicado: (2022)

Comparative analysis of catfish BAC end sequences with the zebrafish genome
por: Liu, Hong, et al.
Publicado: (2009)

A Review of Catfish Genomics: Progress and Perspectives
por: Liu, Zhanjiang
Publicado: (2003)

Transciptome Analysis of the Gill and Swimbladder of Takifugu rubripes by RNA-Seq
por: Cui, Jun, et al.
Publicado: (2014)

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments
por: Yuan, Zihao, et al.
Publicado: (2018)

Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies
por: Wang, Haolong, et al.
Publicado: (2022)

Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions
por: Waldbieser, Geoffrey C., et al.
Publicado: (2023)

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
por: Lu, Jianguo, et al.
Publicado: (2011)

Environment-Dependent Heterosis and Transgressive Gene Expression in Reciprocal Hybrids between the Channel Catfish Ictalurus punctatus and the Blue Catfish Ictalurus furcatus
por: Wang, Haolong, et al.
Publicado: (2022)

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
por: Wang, Shaolin, et al.
Publicado: (2010)

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence
por: Zeng, Qifan, et al.
Publicado: (2017)

Salt Sensitive Tet-Off-Like Systems to Knockdown Primordial Germ Cell Genes for Repressible Transgenic Sterilization in Channel Catfish, Ictalurus punctatus
por: Li, Hanbo, et al.
Publicado: (2017)

Development of Molecular Resources for an Intertidal Clam, Sinonovacula constricta, Using 454 Transcriptome Sequencing
por: Niu, Donghong, et al.
Publicado: (2013)

DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment
por: Wong, Li Lian, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_saet90rcfqhv3r8h0ilfbalp5c