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Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
[Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying int...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711127/ https://www.ncbi.nlm.nih.gov/pubmed/23734751 http://dx.doi.org/10.1021/jp4037099 |
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author | Matthews, Richard Likos, Christos N. |
author_facet | Matthews, Richard Likos, Christos N. |
author_sort | Matthews, Richard |
collection | PubMed |
description | [Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying interaction strength, membrane stiffness, and membrane viscosity. Furthermore, the effect of hydrodynamic interactions is investigated. Attraction to a membrane may promote assembly, including for subunit interaction strengths for which it does not occur in the bulk, and may also decrease single-core assembly time. The membrane budding rate is strongly increased by hydrodynamic interactions. The membrane deformation rate is important in determining the finite-time yield. Higher rates may decrease the entropic penalty for assembly and help guide subunits toward each other but may also block partial cores from being completed. For increasing subunit interaction strength, three regimes with different effects of the membrane are identified. |
format | Online Article Text |
id | pubmed-3711127 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-37111272013-07-15 Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane Matthews, Richard Likos, Christos N. J Phys Chem B [Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying interaction strength, membrane stiffness, and membrane viscosity. Furthermore, the effect of hydrodynamic interactions is investigated. Attraction to a membrane may promote assembly, including for subunit interaction strengths for which it does not occur in the bulk, and may also decrease single-core assembly time. The membrane budding rate is strongly increased by hydrodynamic interactions. The membrane deformation rate is important in determining the finite-time yield. Higher rates may decrease the entropic penalty for assembly and help guide subunits toward each other but may also block partial cores from being completed. For increasing subunit interaction strength, three regimes with different effects of the membrane are identified. American Chemical Society 2013-06-05 2013-07-11 /pmc/articles/PMC3711127/ /pubmed/23734751 http://dx.doi.org/10.1021/jp4037099 Text en Copyright © 2013 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Matthews, Richard Likos, Christos N. Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane |
title | Dynamics of Self-assembly of Model Viral Capsids in
the Presence of a Fluctuating Membrane |
title_full | Dynamics of Self-assembly of Model Viral Capsids in
the Presence of a Fluctuating Membrane |
title_fullStr | Dynamics of Self-assembly of Model Viral Capsids in
the Presence of a Fluctuating Membrane |
title_full_unstemmed | Dynamics of Self-assembly of Model Viral Capsids in
the Presence of a Fluctuating Membrane |
title_short | Dynamics of Self-assembly of Model Viral Capsids in
the Presence of a Fluctuating Membrane |
title_sort | dynamics of self-assembly of model viral capsids in
the presence of a fluctuating membrane |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711127/ https://www.ncbi.nlm.nih.gov/pubmed/23734751 http://dx.doi.org/10.1021/jp4037099 |
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