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Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane

[Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying int...

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Autores principales: Matthews, Richard, Likos, Christos N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2013
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711127/
https://www.ncbi.nlm.nih.gov/pubmed/23734751
http://dx.doi.org/10.1021/jp4037099
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author Matthews, Richard
Likos, Christos N.
author_facet Matthews, Richard
Likos, Christos N.
author_sort Matthews, Richard
collection PubMed
description [Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying interaction strength, membrane stiffness, and membrane viscosity. Furthermore, the effect of hydrodynamic interactions is investigated. Attraction to a membrane may promote assembly, including for subunit interaction strengths for which it does not occur in the bulk, and may also decrease single-core assembly time. The membrane budding rate is strongly increased by hydrodynamic interactions. The membrane deformation rate is important in determining the finite-time yield. Higher rates may decrease the entropic penalty for assembly and help guide subunits toward each other but may also block partial cores from being completed. For increasing subunit interaction strength, three regimes with different effects of the membrane are identified.
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spelling pubmed-37111272013-07-15 Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane Matthews, Richard Likos, Christos N. J Phys Chem B [Image: see text] A coarse-grained computational model is used to investigate the effect of a fluctuating fluid membrane on the dynamics of patchy-particle assembly into virus capsid-like cores. Results from simulations for a broad range of parameters are presented, showing the effect of varying interaction strength, membrane stiffness, and membrane viscosity. Furthermore, the effect of hydrodynamic interactions is investigated. Attraction to a membrane may promote assembly, including for subunit interaction strengths for which it does not occur in the bulk, and may also decrease single-core assembly time. The membrane budding rate is strongly increased by hydrodynamic interactions. The membrane deformation rate is important in determining the finite-time yield. Higher rates may decrease the entropic penalty for assembly and help guide subunits toward each other but may also block partial cores from being completed. For increasing subunit interaction strength, three regimes with different effects of the membrane are identified. American Chemical Society 2013-06-05 2013-07-11 /pmc/articles/PMC3711127/ /pubmed/23734751 http://dx.doi.org/10.1021/jp4037099 Text en Copyright © 2013 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle Matthews, Richard
Likos, Christos N.
Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title_full Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title_fullStr Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title_full_unstemmed Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title_short Dynamics of Self-assembly of Model Viral Capsids in the Presence of a Fluctuating Membrane
title_sort dynamics of self-assembly of model viral capsids in the presence of a fluctuating membrane
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711127/
https://www.ncbi.nlm.nih.gov/pubmed/23734751
http://dx.doi.org/10.1021/jp4037099
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