Cargando…
The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli
The lactose operon of Escherichia coli is a paradigm system for quantitative understanding of gene regulation in prokaryotes. Yet, none of the many mathematical models built so far to study the dynamics of this system considered the fact that the Lac repressor regulates its own transcription by form...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711431/ https://www.ncbi.nlm.nih.gov/pubmed/23658223 http://dx.doi.org/10.1093/nar/gkt351 |
_version_ | 1782276948037206016 |
---|---|
author | Semsey, Szabolcs Jauffred, Liselotte Csiszovszki, Zsolt Erdőssy, János Stéger, Viktor Hansen, Sabine Krishna, Sandeep |
author_facet | Semsey, Szabolcs Jauffred, Liselotte Csiszovszki, Zsolt Erdőssy, János Stéger, Viktor Hansen, Sabine Krishna, Sandeep |
author_sort | Semsey, Szabolcs |
collection | PubMed |
description | The lactose operon of Escherichia coli is a paradigm system for quantitative understanding of gene regulation in prokaryotes. Yet, none of the many mathematical models built so far to study the dynamics of this system considered the fact that the Lac repressor regulates its own transcription by forming a transcriptional roadblock at the O3 operator site. Here we study the effect of autoregulation on intracellular LacI levels and also show that cAMP-CRP binding does not affect the efficiency of autoregulation. We built a mathematical model to study the role of LacI autoregulation in the lactose utilization system. Previously, it has been argued that negative autoregulation can significantly reduce noise as well as increase the speed of response. We show that the particular molecular mechanism, a transcriptional roadblock, used to achieve self-repression in the lac system does neither. Instead, LacI autoregulation balances two opposing states, one that allows quicker response to smaller pulses of external lactose, and the other that minimizes production costs in the absence of lactose. |
format | Online Article Text |
id | pubmed-3711431 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-37114312013-07-15 The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli Semsey, Szabolcs Jauffred, Liselotte Csiszovszki, Zsolt Erdőssy, János Stéger, Viktor Hansen, Sabine Krishna, Sandeep Nucleic Acids Res Computational Biology The lactose operon of Escherichia coli is a paradigm system for quantitative understanding of gene regulation in prokaryotes. Yet, none of the many mathematical models built so far to study the dynamics of this system considered the fact that the Lac repressor regulates its own transcription by forming a transcriptional roadblock at the O3 operator site. Here we study the effect of autoregulation on intracellular LacI levels and also show that cAMP-CRP binding does not affect the efficiency of autoregulation. We built a mathematical model to study the role of LacI autoregulation in the lactose utilization system. Previously, it has been argued that negative autoregulation can significantly reduce noise as well as increase the speed of response. We show that the particular molecular mechanism, a transcriptional roadblock, used to achieve self-repression in the lac system does neither. Instead, LacI autoregulation balances two opposing states, one that allows quicker response to smaller pulses of external lactose, and the other that minimizes production costs in the absence of lactose. Oxford University Press 2013-07 2013-05-08 /pmc/articles/PMC3711431/ /pubmed/23658223 http://dx.doi.org/10.1093/nar/gkt351 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Computational Biology Semsey, Szabolcs Jauffred, Liselotte Csiszovszki, Zsolt Erdőssy, János Stéger, Viktor Hansen, Sabine Krishna, Sandeep The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title | The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title_full | The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title_fullStr | The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title_full_unstemmed | The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title_short | The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli |
title_sort | effect of laci autoregulation on the performance of the lactose utilization system in escherichia coli |
topic | Computational Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711431/ https://www.ncbi.nlm.nih.gov/pubmed/23658223 http://dx.doi.org/10.1093/nar/gkt351 |
work_keys_str_mv | AT semseyszabolcs theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT jauffredliselotte theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT csiszovszkizsolt theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT erdossyjanos theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT stegerviktor theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT hansensabine theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT krishnasandeep theeffectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT semseyszabolcs effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT jauffredliselotte effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT csiszovszkizsolt effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT erdossyjanos effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT stegerviktor effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT hansensabine effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli AT krishnasandeep effectoflaciautoregulationontheperformanceofthelactoseutilizationsysteminescherichiacoli |