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Exploring the limits of community detection strategies in complex networks
The characterization of network community structure has profound implications in several scientific areas. Therefore, testing the algorithms developed to establish the optimal division of a network into communities is a fundamental problem in the field. We performed here a highly detailed evaluation...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713530/ https://www.ncbi.nlm.nih.gov/pubmed/23860510 http://dx.doi.org/10.1038/srep02216 |
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author | Aldecoa, Rodrigo Marín, Ignacio |
author_facet | Aldecoa, Rodrigo Marín, Ignacio |
author_sort | Aldecoa, Rodrigo |
collection | PubMed |
description | The characterization of network community structure has profound implications in several scientific areas. Therefore, testing the algorithms developed to establish the optimal division of a network into communities is a fundamental problem in the field. We performed here a highly detailed evaluation of community detection algorithms, which has two main novelties: 1) using complex closed benchmarks, which provide precise ways to assess whether the solutions generated by the algorithms are optimal; and, 2) A novel type of analysis, based on hierarchically clustering the solutions suggested by multiple community detection algorithms, which allows to easily visualize how different are those solutions. Surprise, a global parameter that evaluates the quality of a partition, confirms the power of these analyses. We show that none of the community detection algorithms tested provide consistently optimal results in all networks and that Surprise maximization, obtained by combining multiple algorithms, obtains quasi-optimal performances in these difficult benchmarks. |
format | Online Article Text |
id | pubmed-3713530 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-37135302013-07-17 Exploring the limits of community detection strategies in complex networks Aldecoa, Rodrigo Marín, Ignacio Sci Rep Article The characterization of network community structure has profound implications in several scientific areas. Therefore, testing the algorithms developed to establish the optimal division of a network into communities is a fundamental problem in the field. We performed here a highly detailed evaluation of community detection algorithms, which has two main novelties: 1) using complex closed benchmarks, which provide precise ways to assess whether the solutions generated by the algorithms are optimal; and, 2) A novel type of analysis, based on hierarchically clustering the solutions suggested by multiple community detection algorithms, which allows to easily visualize how different are those solutions. Surprise, a global parameter that evaluates the quality of a partition, confirms the power of these analyses. We show that none of the community detection algorithms tested provide consistently optimal results in all networks and that Surprise maximization, obtained by combining multiple algorithms, obtains quasi-optimal performances in these difficult benchmarks. Nature Publishing Group 2013-07-17 /pmc/articles/PMC3713530/ /pubmed/23860510 http://dx.doi.org/10.1038/srep02216 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Article Aldecoa, Rodrigo Marín, Ignacio Exploring the limits of community detection strategies in complex networks |
title | Exploring the limits of community detection strategies in complex networks |
title_full | Exploring the limits of community detection strategies in complex networks |
title_fullStr | Exploring the limits of community detection strategies in complex networks |
title_full_unstemmed | Exploring the limits of community detection strategies in complex networks |
title_short | Exploring the limits of community detection strategies in complex networks |
title_sort | exploring the limits of community detection strategies in complex networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713530/ https://www.ncbi.nlm.nih.gov/pubmed/23860510 http://dx.doi.org/10.1038/srep02216 |
work_keys_str_mv | AT aldecoarodrigo exploringthelimitsofcommunitydetectionstrategiesincomplexnetworks AT marinignacio exploringthelimitsofcommunitydetectionstrategiesincomplexnetworks |