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The Rat Genome Database 2013—data, tools and users

The Rat Genome Database (RGD) was started >10 years ago to provide a core genomic resource for rat researchers. Currently, RGD combines genetic, genomic, pathway, phenotype and strain information with a focus on disease. RGD users are provided with access to structured and curated data from the m...

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Autores principales: Laulederkind, Stanley J. F., Hayman, G. Thomas, Wang, Shur-Jen, Smith, Jennifer R., Lowry, Timothy F., Nigam, Rajni, Petri, Victoria, de Pons, Jeff, Dwinell, Melinda R., Shimoyama, Mary, Munzenmaier, Diane H., Worthey, Elizabeth A., Jacob, Howard J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713714/
https://www.ncbi.nlm.nih.gov/pubmed/23434633
http://dx.doi.org/10.1093/bib/bbt007
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author Laulederkind, Stanley J. F.
Hayman, G. Thomas
Wang, Shur-Jen
Smith, Jennifer R.
Lowry, Timothy F.
Nigam, Rajni
Petri, Victoria
de Pons, Jeff
Dwinell, Melinda R.
Shimoyama, Mary
Munzenmaier, Diane H.
Worthey, Elizabeth A.
Jacob, Howard J.
author_facet Laulederkind, Stanley J. F.
Hayman, G. Thomas
Wang, Shur-Jen
Smith, Jennifer R.
Lowry, Timothy F.
Nigam, Rajni
Petri, Victoria
de Pons, Jeff
Dwinell, Melinda R.
Shimoyama, Mary
Munzenmaier, Diane H.
Worthey, Elizabeth A.
Jacob, Howard J.
author_sort Laulederkind, Stanley J. F.
collection PubMed
description The Rat Genome Database (RGD) was started >10 years ago to provide a core genomic resource for rat researchers. Currently, RGD combines genetic, genomic, pathway, phenotype and strain information with a focus on disease. RGD users are provided with access to structured and curated data from the molecular level through the organismal level. Those users access RGD from all over the world. End users are not only rat researchers but also researchers working with mouse and human data. Translational research is supported by RGD’s comparative genetics/genomics data in disease portals, in GBrowse, in VCMap and on gene report pages. The impact of RGD also goes beyond the traditional biomedical researcher, as the influence of RGD reaches bioinformaticians, tool developers and curators. Import of RGD data into other publicly available databases expands the influence of RGD to a larger set of end users than those who avail themselves of the RGD website. The value of RGD continues to grow as more types of data and more tools are added, while reaching more types of end users.
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spelling pubmed-37137142013-07-17 The Rat Genome Database 2013—data, tools and users Laulederkind, Stanley J. F. Hayman, G. Thomas Wang, Shur-Jen Smith, Jennifer R. Lowry, Timothy F. Nigam, Rajni Petri, Victoria de Pons, Jeff Dwinell, Melinda R. Shimoyama, Mary Munzenmaier, Diane H. Worthey, Elizabeth A. Jacob, Howard J. Brief Bioinform Papers The Rat Genome Database (RGD) was started >10 years ago to provide a core genomic resource for rat researchers. Currently, RGD combines genetic, genomic, pathway, phenotype and strain information with a focus on disease. RGD users are provided with access to structured and curated data from the molecular level through the organismal level. Those users access RGD from all over the world. End users are not only rat researchers but also researchers working with mouse and human data. Translational research is supported by RGD’s comparative genetics/genomics data in disease portals, in GBrowse, in VCMap and on gene report pages. The impact of RGD also goes beyond the traditional biomedical researcher, as the influence of RGD reaches bioinformaticians, tool developers and curators. Import of RGD data into other publicly available databases expands the influence of RGD to a larger set of end users than those who avail themselves of the RGD website. The value of RGD continues to grow as more types of data and more tools are added, while reaching more types of end users. Oxford University Press 2013-07 2013-02-22 /pmc/articles/PMC3713714/ /pubmed/23434633 http://dx.doi.org/10.1093/bib/bbt007 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Papers
Laulederkind, Stanley J. F.
Hayman, G. Thomas
Wang, Shur-Jen
Smith, Jennifer R.
Lowry, Timothy F.
Nigam, Rajni
Petri, Victoria
de Pons, Jeff
Dwinell, Melinda R.
Shimoyama, Mary
Munzenmaier, Diane H.
Worthey, Elizabeth A.
Jacob, Howard J.
The Rat Genome Database 2013—data, tools and users
title The Rat Genome Database 2013—data, tools and users
title_full The Rat Genome Database 2013—data, tools and users
title_fullStr The Rat Genome Database 2013—data, tools and users
title_full_unstemmed The Rat Genome Database 2013—data, tools and users
title_short The Rat Genome Database 2013—data, tools and users
title_sort rat genome database 2013—data, tools and users
topic Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713714/
https://www.ncbi.nlm.nih.gov/pubmed/23434633
http://dx.doi.org/10.1093/bib/bbt007
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