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Accurate assessment of mass, models and resolution by small-angle scattering
Modern small angle scattering (SAS) experiments with X-rays or neutrons provide a comprehensive, resolution-limited observation of the thermodynamic state. However, methods for evaluating mass and validating SAS based models and resolution have been inadequate. Here, we define the volume-of-correlat...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3714217/ https://www.ncbi.nlm.nih.gov/pubmed/23619693 http://dx.doi.org/10.1038/nature12070 |
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author | Rambo, Robert P. Tainer, John A. |
author_facet | Rambo, Robert P. Tainer, John A. |
author_sort | Rambo, Robert P. |
collection | PubMed |
description | Modern small angle scattering (SAS) experiments with X-rays or neutrons provide a comprehensive, resolution-limited observation of the thermodynamic state. However, methods for evaluating mass and validating SAS based models and resolution have been inadequate. Here, we define the volume-of-correlation, V(c): a SAS invariant derived from the scattered intensities that is specific to the structural state of the particle, yet independent of concentration and the requirements of a compact, folded particle. We show V(c) defines a ratio, Qr, that determines the molecular mass of proteins or RNA ranging from 10 to 1,000 kDa. Furthermore, we propose a statistically robust method for assessing model-data agreements (X(2)(free)) akin to cross-validation. Our approach prevents over-fitting of the SAS data and can be used with a newly defined metric, R(sas), for quantitative evaluation of resolution. Together, these metrics (V(c), Qr, X(2)(free), and R(sas)) provide analytical tools for unbiased and accurate macromolecular structural characterizations in solution. |
format | Online Article Text |
id | pubmed-3714217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
record_format | MEDLINE/PubMed |
spelling | pubmed-37142172013-10-25 Accurate assessment of mass, models and resolution by small-angle scattering Rambo, Robert P. Tainer, John A. Nature Article Modern small angle scattering (SAS) experiments with X-rays or neutrons provide a comprehensive, resolution-limited observation of the thermodynamic state. However, methods for evaluating mass and validating SAS based models and resolution have been inadequate. Here, we define the volume-of-correlation, V(c): a SAS invariant derived from the scattered intensities that is specific to the structural state of the particle, yet independent of concentration and the requirements of a compact, folded particle. We show V(c) defines a ratio, Qr, that determines the molecular mass of proteins or RNA ranging from 10 to 1,000 kDa. Furthermore, we propose a statistically robust method for assessing model-data agreements (X(2)(free)) akin to cross-validation. Our approach prevents over-fitting of the SAS data and can be used with a newly defined metric, R(sas), for quantitative evaluation of resolution. Together, these metrics (V(c), Qr, X(2)(free), and R(sas)) provide analytical tools for unbiased and accurate macromolecular structural characterizations in solution. 2013-04-25 /pmc/articles/PMC3714217/ /pubmed/23619693 http://dx.doi.org/10.1038/nature12070 Text en Users may view, print, copy, download and text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Rambo, Robert P. Tainer, John A. Accurate assessment of mass, models and resolution by small-angle scattering |
title | Accurate assessment of mass, models and resolution by small-angle scattering |
title_full | Accurate assessment of mass, models and resolution by small-angle scattering |
title_fullStr | Accurate assessment of mass, models and resolution by small-angle scattering |
title_full_unstemmed | Accurate assessment of mass, models and resolution by small-angle scattering |
title_short | Accurate assessment of mass, models and resolution by small-angle scattering |
title_sort | accurate assessment of mass, models and resolution by small-angle scattering |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3714217/ https://www.ncbi.nlm.nih.gov/pubmed/23619693 http://dx.doi.org/10.1038/nature12070 |
work_keys_str_mv | AT ramborobertp accurateassessmentofmassmodelsandresolutionbysmallanglescattering AT tainerjohna accurateassessmentofmassmodelsandresolutionbysmallanglescattering |