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Bioinformatics analysis of the gene expression profile in Bladder carcinoma
Bladder carcinoma, which has the ninth highest incidence among malignant tumors in the world, is a complex, multifactorial disease. The malignant transformation of bladder cells results from DNA mutations and alterations in gene expression levels. In this work, we used a bioinformatics approach to i...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Sociedade Brasileira de Genética
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715297/ https://www.ncbi.nlm.nih.gov/pubmed/23885213 http://dx.doi.org/10.1590/S1415-47572013005000015 |
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author | Xiao, Jing Yiqing, Qiu |
author_facet | Xiao, Jing Yiqing, Qiu |
author_sort | Xiao, Jing |
collection | PubMed |
description | Bladder carcinoma, which has the ninth highest incidence among malignant tumors in the world, is a complex, multifactorial disease. The malignant transformation of bladder cells results from DNA mutations and alterations in gene expression levels. In this work, we used a bioinformatics approach to investigate the molecular mechanisms of bladder carcinoma. Biochips downloaded from the Gene Expression Omnibus (GEO) were used to analyze the gene expression profile in urinary bladder cells from individuals with carcinoma. The gene expression profile of normal genomes was used as a control. The analysis of gene expression revealed important alterations in genes involved in biological processes and metabolic pathways. We also identified some small molecules capable of reversing the altered gene expression in bladder carcinoma; these molecules could provide a basis for future therapies for the treatment of this disease. |
format | Online Article Text |
id | pubmed-3715297 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Sociedade Brasileira de Genética |
record_format | MEDLINE/PubMed |
spelling | pubmed-37152972013-07-24 Bioinformatics analysis of the gene expression profile in Bladder carcinoma Xiao, Jing Yiqing, Qiu Genet Mol Biol Genomics and Bioinformatics Bladder carcinoma, which has the ninth highest incidence among malignant tumors in the world, is a complex, multifactorial disease. The malignant transformation of bladder cells results from DNA mutations and alterations in gene expression levels. In this work, we used a bioinformatics approach to investigate the molecular mechanisms of bladder carcinoma. Biochips downloaded from the Gene Expression Omnibus (GEO) were used to analyze the gene expression profile in urinary bladder cells from individuals with carcinoma. The gene expression profile of normal genomes was used as a control. The analysis of gene expression revealed important alterations in genes involved in biological processes and metabolic pathways. We also identified some small molecules capable of reversing the altered gene expression in bladder carcinoma; these molecules could provide a basis for future therapies for the treatment of this disease. Sociedade Brasileira de Genética 2013-07 2013-04-12 /pmc/articles/PMC3715297/ /pubmed/23885213 http://dx.doi.org/10.1590/S1415-47572013005000015 Text en Copyright © 2013, Sociedade Brasileira de Genética. License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genomics and Bioinformatics Xiao, Jing Yiqing, Qiu Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title | Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title_full | Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title_fullStr | Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title_full_unstemmed | Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title_short | Bioinformatics analysis of the gene expression profile in Bladder carcinoma |
title_sort | bioinformatics analysis of the gene expression profile in bladder carcinoma |
topic | Genomics and Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715297/ https://www.ncbi.nlm.nih.gov/pubmed/23885213 http://dx.doi.org/10.1590/S1415-47572013005000015 |
work_keys_str_mv | AT xiaojing bioinformaticsanalysisofthegeneexpressionprofileinbladdercarcinoma AT yiqingqiu bioinformaticsanalysisofthegeneexpressionprofileinbladdercarcinoma |