Cargando…
Roles for Ordered and Bulk Solvent in Ligand Recognition and Docking in Two Related Cavities
A key challenge in structure-based discovery is accounting for modulation of protein-ligand interactions by ordered and bulk solvent. To investigate this, we compared ligand binding to a buried cavity in Cytochrome c Peroxidase (CcP), where affinity is dominated by a single ionic interaction, versus...
Autores principales: | Barelier, Sarah, Boyce, Sarah E., Fish, Inbar, Fischer, Marcus, Goodin, David B., Shoichet, Brian K. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715451/ https://www.ncbi.nlm.nih.gov/pubmed/23874896 http://dx.doi.org/10.1371/journal.pone.0069153 |
Ejemplares similares
-
The Impact
of Introducing a Histidine into an Apolar
Cavity Site on Docking and Ligand Recognition
por: Merski, Matthew, et al.
Publicado: (2013) -
Identification of Novel Smoothened Ligands Using Structure-Based Docking
por: Lacroix, Celine, et al.
Publicado: (2016) -
Increasing Chemical Space Coverage by Combining Empirical
and Computational Fragment Screens
por: Barelier, Sarah, et al.
Publicado: (2014) -
The incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery
por: Fischer, Marcus, et al.
Publicado: (2014) -
Substrate
Deconstruction and the Nonadditivity of
Enzyme Recognition
por: Barelier, Sarah, et al.
Publicado: (2014)