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A phylogenetic re-evaluation of Arthrinium
Although the genus Arthrinium (sexual morph Apiospora) is commonly isolated as an endophyte from a range of substrates, and is extremely interesting for the pharmaceutical industry, its molecular phylogeny has never been resolved. Based on morphology and DNA sequence data of the large subunit nuclea...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Mycological Association
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719201/ https://www.ncbi.nlm.nih.gov/pubmed/23898419 http://dx.doi.org/10.5598/imafungus.2013.04.01.13 |
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author | Crous, Pedro W. Groenewald, Johannes Z. |
author_facet | Crous, Pedro W. Groenewald, Johannes Z. |
author_sort | Crous, Pedro W. |
collection | PubMed |
description | Although the genus Arthrinium (sexual morph Apiospora) is commonly isolated as an endophyte from a range of substrates, and is extremely interesting for the pharmaceutical industry, its molecular phylogeny has never been resolved. Based on morphology and DNA sequence data of the large subunit nuclear ribosomal RNA gene (LSU, 28S) and the internal transcribed spacers (ITS) and 5.8S rRNA gene of the nrDNA operon, the genus Arthrinium is shown to belong to Apiosporaceae in Xylariales. Arthrinium is morphologically and phylogenetically circumscribed, and the sexual genus Apiospora treated as synonym on the basis that Arthinium is older, more commonly encountered, and more frequently used in literature. An epitype is designated for Arthrinium pterospermum, and several well-known species are redefined based on their morphology and sequence data of the translation elongation factor 1-alpha (TEF), beta-tubulin (TUB) and internal transcribed spacer (ITS1, 5.8S, ITS2) gene regions. Newly described are A. hydei on Bambusa tuldoides from Hong Kong, A. kogelbergense on dead culms of Restionaceae from South Africa, A. malaysianum on Macaranga hullettii from Malaysia, A. ovatum on Arundinaria hindsii from Hong Kong, A. phragmites on Phragmites australis from Italy, A. pseudospegazzinii on Macaranga hullettii from Malaysia, A. pseudosinense on bamboo from The Netherlands, and A. xenocordella from soil in Zimbabwe. Furthermore, the genera Pteroconium and Cordella are also reduced to synonymy, rejecting spore shape and the presence of setae as characters of generic significance separating them from Arthrinium |
format | Online Article Text |
id | pubmed-3719201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | International Mycological Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-37192012013-07-29 A phylogenetic re-evaluation of Arthrinium Crous, Pedro W. Groenewald, Johannes Z. IMA Fungus Article Although the genus Arthrinium (sexual morph Apiospora) is commonly isolated as an endophyte from a range of substrates, and is extremely interesting for the pharmaceutical industry, its molecular phylogeny has never been resolved. Based on morphology and DNA sequence data of the large subunit nuclear ribosomal RNA gene (LSU, 28S) and the internal transcribed spacers (ITS) and 5.8S rRNA gene of the nrDNA operon, the genus Arthrinium is shown to belong to Apiosporaceae in Xylariales. Arthrinium is morphologically and phylogenetically circumscribed, and the sexual genus Apiospora treated as synonym on the basis that Arthinium is older, more commonly encountered, and more frequently used in literature. An epitype is designated for Arthrinium pterospermum, and several well-known species are redefined based on their morphology and sequence data of the translation elongation factor 1-alpha (TEF), beta-tubulin (TUB) and internal transcribed spacer (ITS1, 5.8S, ITS2) gene regions. Newly described are A. hydei on Bambusa tuldoides from Hong Kong, A. kogelbergense on dead culms of Restionaceae from South Africa, A. malaysianum on Macaranga hullettii from Malaysia, A. ovatum on Arundinaria hindsii from Hong Kong, A. phragmites on Phragmites australis from Italy, A. pseudospegazzinii on Macaranga hullettii from Malaysia, A. pseudosinense on bamboo from The Netherlands, and A. xenocordella from soil in Zimbabwe. Furthermore, the genera Pteroconium and Cordella are also reduced to synonymy, rejecting spore shape and the presence of setae as characters of generic significance separating them from Arthrinium International Mycological Association 2013-06-24 2013-07 /pmc/articles/PMC3719201/ /pubmed/23898419 http://dx.doi.org/10.5598/imafungus.2013.04.01.13 Text en © 2013 International Mycological Association http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Article Crous, Pedro W. Groenewald, Johannes Z. A phylogenetic re-evaluation of Arthrinium |
title | A phylogenetic re-evaluation of Arthrinium |
title_full | A phylogenetic re-evaluation of Arthrinium |
title_fullStr | A phylogenetic re-evaluation of Arthrinium |
title_full_unstemmed | A phylogenetic re-evaluation of Arthrinium |
title_short | A phylogenetic re-evaluation of Arthrinium |
title_sort | phylogenetic re-evaluation of arthrinium |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719201/ https://www.ncbi.nlm.nih.gov/pubmed/23898419 http://dx.doi.org/10.5598/imafungus.2013.04.01.13 |
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