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Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework

The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. I...

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Autores principales: Mäki-Marttunen, Tuomo, Aćimović, Jugoslava, Ruohonen, Keijo, Linne, Marja-Leena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723901/
https://www.ncbi.nlm.nih.gov/pubmed/23935998
http://dx.doi.org/10.1371/journal.pone.0069373
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author Mäki-Marttunen, Tuomo
Aćimović, Jugoslava
Ruohonen, Keijo
Linne, Marja-Leena
author_facet Mäki-Marttunen, Tuomo
Aćimović, Jugoslava
Ruohonen, Keijo
Linne, Marja-Leena
author_sort Mäki-Marttunen, Tuomo
collection PubMed
description The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. In this in silico study, we employ a wide diversity of network topologies and search among many possibilities the aspects of structure that have the greatest effect on the network excitability. The network activity is simulated using two point-neuron models, where the neurons are activated by noisy fluctuation of the membrane potential and their connections are described by chemical synapse models, and statistics on the number and quality of the emergent network bursts are collected for each network type. We apply a prediction framework to the obtained data in order to find out the most relevant aspects of network structure. In this framework, predictors that use different sets of graph-theoretic measures are trained to estimate the activity properties, such as burst count or burst length, of the networks. The performances of these predictors are compared with each other. We show that the best performance in prediction of activity properties for networks with sharp in-degree distribution is obtained when the prediction is based on clustering coefficient. By contrast, for networks with broad in-degree distribution, the maximum eigenvalue of the connectivity graph gives the most accurate prediction. The results shown for small ([Image: see text]) networks hold with few exceptions when different neuron models, different choices of neuron population and different average degrees are applied. We confirm our conclusions using larger ([Image: see text]) networks as well. Our findings reveal the relevance of different aspects of network structure from the viewpoint of network excitability, and our integrative method could serve as a general framework for structure-dynamics studies in biosciences.
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spelling pubmed-37239012013-08-09 Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework Mäki-Marttunen, Tuomo Aćimović, Jugoslava Ruohonen, Keijo Linne, Marja-Leena PLoS One Research Article The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. In this in silico study, we employ a wide diversity of network topologies and search among many possibilities the aspects of structure that have the greatest effect on the network excitability. The network activity is simulated using two point-neuron models, where the neurons are activated by noisy fluctuation of the membrane potential and their connections are described by chemical synapse models, and statistics on the number and quality of the emergent network bursts are collected for each network type. We apply a prediction framework to the obtained data in order to find out the most relevant aspects of network structure. In this framework, predictors that use different sets of graph-theoretic measures are trained to estimate the activity properties, such as burst count or burst length, of the networks. The performances of these predictors are compared with each other. We show that the best performance in prediction of activity properties for networks with sharp in-degree distribution is obtained when the prediction is based on clustering coefficient. By contrast, for networks with broad in-degree distribution, the maximum eigenvalue of the connectivity graph gives the most accurate prediction. The results shown for small ([Image: see text]) networks hold with few exceptions when different neuron models, different choices of neuron population and different average degrees are applied. We confirm our conclusions using larger ([Image: see text]) networks as well. Our findings reveal the relevance of different aspects of network structure from the viewpoint of network excitability, and our integrative method could serve as a general framework for structure-dynamics studies in biosciences. Public Library of Science 2013-07-25 /pmc/articles/PMC3723901/ /pubmed/23935998 http://dx.doi.org/10.1371/journal.pone.0069373 Text en © 2013 Mäki-Marttunen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Mäki-Marttunen, Tuomo
Aćimović, Jugoslava
Ruohonen, Keijo
Linne, Marja-Leena
Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title_full Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title_fullStr Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title_full_unstemmed Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title_short Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
title_sort structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723901/
https://www.ncbi.nlm.nih.gov/pubmed/23935998
http://dx.doi.org/10.1371/journal.pone.0069373
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