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Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework
The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. I...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723901/ https://www.ncbi.nlm.nih.gov/pubmed/23935998 http://dx.doi.org/10.1371/journal.pone.0069373 |
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author | Mäki-Marttunen, Tuomo Aćimović, Jugoslava Ruohonen, Keijo Linne, Marja-Leena |
author_facet | Mäki-Marttunen, Tuomo Aćimović, Jugoslava Ruohonen, Keijo Linne, Marja-Leena |
author_sort | Mäki-Marttunen, Tuomo |
collection | PubMed |
description | The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. In this in silico study, we employ a wide diversity of network topologies and search among many possibilities the aspects of structure that have the greatest effect on the network excitability. The network activity is simulated using two point-neuron models, where the neurons are activated by noisy fluctuation of the membrane potential and their connections are described by chemical synapse models, and statistics on the number and quality of the emergent network bursts are collected for each network type. We apply a prediction framework to the obtained data in order to find out the most relevant aspects of network structure. In this framework, predictors that use different sets of graph-theoretic measures are trained to estimate the activity properties, such as burst count or burst length, of the networks. The performances of these predictors are compared with each other. We show that the best performance in prediction of activity properties for networks with sharp in-degree distribution is obtained when the prediction is based on clustering coefficient. By contrast, for networks with broad in-degree distribution, the maximum eigenvalue of the connectivity graph gives the most accurate prediction. The results shown for small ([Image: see text]) networks hold with few exceptions when different neuron models, different choices of neuron population and different average degrees are applied. We confirm our conclusions using larger ([Image: see text]) networks as well. Our findings reveal the relevance of different aspects of network structure from the viewpoint of network excitability, and our integrative method could serve as a general framework for structure-dynamics studies in biosciences. |
format | Online Article Text |
id | pubmed-3723901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-37239012013-08-09 Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework Mäki-Marttunen, Tuomo Aćimović, Jugoslava Ruohonen, Keijo Linne, Marja-Leena PLoS One Research Article The question of how the structure of a neuronal network affects its functionality has gained a lot of attention in neuroscience. However, the vast majority of the studies on structure-dynamics relationships consider few types of network structures and assess limited numbers of structural measures. In this in silico study, we employ a wide diversity of network topologies and search among many possibilities the aspects of structure that have the greatest effect on the network excitability. The network activity is simulated using two point-neuron models, where the neurons are activated by noisy fluctuation of the membrane potential and their connections are described by chemical synapse models, and statistics on the number and quality of the emergent network bursts are collected for each network type. We apply a prediction framework to the obtained data in order to find out the most relevant aspects of network structure. In this framework, predictors that use different sets of graph-theoretic measures are trained to estimate the activity properties, such as burst count or burst length, of the networks. The performances of these predictors are compared with each other. We show that the best performance in prediction of activity properties for networks with sharp in-degree distribution is obtained when the prediction is based on clustering coefficient. By contrast, for networks with broad in-degree distribution, the maximum eigenvalue of the connectivity graph gives the most accurate prediction. The results shown for small ([Image: see text]) networks hold with few exceptions when different neuron models, different choices of neuron population and different average degrees are applied. We confirm our conclusions using larger ([Image: see text]) networks as well. Our findings reveal the relevance of different aspects of network structure from the viewpoint of network excitability, and our integrative method could serve as a general framework for structure-dynamics studies in biosciences. Public Library of Science 2013-07-25 /pmc/articles/PMC3723901/ /pubmed/23935998 http://dx.doi.org/10.1371/journal.pone.0069373 Text en © 2013 Mäki-Marttunen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Mäki-Marttunen, Tuomo Aćimović, Jugoslava Ruohonen, Keijo Linne, Marja-Leena Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title | Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title_full | Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title_fullStr | Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title_full_unstemmed | Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title_short | Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework |
title_sort | structure-dynamics relationships in bursting neuronal networks revealed using a prediction framework |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723901/ https://www.ncbi.nlm.nih.gov/pubmed/23935998 http://dx.doi.org/10.1371/journal.pone.0069373 |
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