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White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation
Image-based tractography of white matter (WM) fiber bundles in the brain using diffusion weighted MRI (DW-MRI) has become a useful tool in basic and clinical neuroscience. However, proper tracking is challenging due to the anatomical complexity of fiber pathways, the coarse resolution of clinically...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3724124/ https://www.ncbi.nlm.nih.gov/pubmed/23898264 http://dx.doi.org/10.3389/fninf.2013.00013 |
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author | Losnegård, Are Lundervold, Arvid Hodneland, Erlend |
author_facet | Losnegård, Are Lundervold, Arvid Hodneland, Erlend |
author_sort | Losnegård, Are |
collection | PubMed |
description | Image-based tractography of white matter (WM) fiber bundles in the brain using diffusion weighted MRI (DW-MRI) has become a useful tool in basic and clinical neuroscience. However, proper tracking is challenging due to the anatomical complexity of fiber pathways, the coarse resolution of clinically applicable whole-brain in vivo imaging techniques, and the difficulties associated with verification. In this study we introduce a new tractography algorithm using splines (denoted Spline). Spline reconstructs smooth fiber trajectories iteratively, in contrast to most other tractography algorithms that create piecewise linear fiber tract segments, followed by spline fitting. Using DW-MRI recordings from eight healthy elderly people participating in a longitudinal study of cognitive aging, we compare our Spline algorithm to two state-of-the-art tracking methods from the TrackVis software suite. The comparison is done quantitatively using diffusion metrics (fractional anisotropy, FA), with both (1) tract averaging, (2) longitudinal linear mixed-effects model fitting, and (3) detailed along-tract analysis. Further validation is done on recordings from a diffusion hardware phantom, mimicking a coronal brain slice, with a known ground truth. Results from the longitudinal aging study showed high sensitivity of Spline tracking to individual aging patterns of mean FA when combined with linear mixed-effects modeling, moderately strong differences in the along-tract analysis of specific tracts, whereas the tract-averaged comparison using simple linear OLS regression revealed less differences between Spline and the two other tractography algorithms. In the brain phantom experiments with a ground truth, we demonstrated improved tracking ability of Spline compared to the two reference tractography algorithms being tested. |
format | Online Article Text |
id | pubmed-3724124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-37241242013-07-29 White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation Losnegård, Are Lundervold, Arvid Hodneland, Erlend Front Neuroinform Neuroscience Image-based tractography of white matter (WM) fiber bundles in the brain using diffusion weighted MRI (DW-MRI) has become a useful tool in basic and clinical neuroscience. However, proper tracking is challenging due to the anatomical complexity of fiber pathways, the coarse resolution of clinically applicable whole-brain in vivo imaging techniques, and the difficulties associated with verification. In this study we introduce a new tractography algorithm using splines (denoted Spline). Spline reconstructs smooth fiber trajectories iteratively, in contrast to most other tractography algorithms that create piecewise linear fiber tract segments, followed by spline fitting. Using DW-MRI recordings from eight healthy elderly people participating in a longitudinal study of cognitive aging, we compare our Spline algorithm to two state-of-the-art tracking methods from the TrackVis software suite. The comparison is done quantitatively using diffusion metrics (fractional anisotropy, FA), with both (1) tract averaging, (2) longitudinal linear mixed-effects model fitting, and (3) detailed along-tract analysis. Further validation is done on recordings from a diffusion hardware phantom, mimicking a coronal brain slice, with a known ground truth. Results from the longitudinal aging study showed high sensitivity of Spline tracking to individual aging patterns of mean FA when combined with linear mixed-effects modeling, moderately strong differences in the along-tract analysis of specific tracts, whereas the tract-averaged comparison using simple linear OLS regression revealed less differences between Spline and the two other tractography algorithms. In the brain phantom experiments with a ground truth, we demonstrated improved tracking ability of Spline compared to the two reference tractography algorithms being tested. Frontiers Media S.A. 2013-07-26 /pmc/articles/PMC3724124/ /pubmed/23898264 http://dx.doi.org/10.3389/fninf.2013.00013 Text en Copyright © 2013 Losnegård, Lundervold and Hodneland. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc. |
spellingShingle | Neuroscience Losnegård, Are Lundervold, Arvid Hodneland, Erlend White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title | White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title_full | White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title_fullStr | White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title_full_unstemmed | White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title_short | White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
title_sort | white matter fiber tracking directed by interpolating splines and a methodological framework for evaluation |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3724124/ https://www.ncbi.nlm.nih.gov/pubmed/23898264 http://dx.doi.org/10.3389/fninf.2013.00013 |
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