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ASRDb: A comprehensive resource for archaeal stress response genes

An organism's survival strategy under the constantly changing environment depends on its ability to sense and respond to changes in its environment. Archaea, being capable to grow under various extreme environmental conditions, provide valuable model for exploring how single-celled organisms re...

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Detalles Bibliográficos
Autores principales: Labala, Rajendra Kumar, Das, Santasabuj, Basak, Surajit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725008/
https://www.ncbi.nlm.nih.gov/pubmed/23904744
http://dx.doi.org/10.6026/97320630009650
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author Labala, Rajendra Kumar
Das, Santasabuj
Basak, Surajit
author_facet Labala, Rajendra Kumar
Das, Santasabuj
Basak, Surajit
author_sort Labala, Rajendra Kumar
collection PubMed
description An organism's survival strategy under the constantly changing environment depends on its ability to sense and respond to changes in its environment. Archaea, being capable to grow under various extreme environmental conditions, provide valuable model for exploring how single-celled organisms respond to environmental stresses. However, no such approach has ever been made to make an integrated classification of various archaeal stress responses. Archaeal Stress Response Database (ASRDb) is a web accessible (http://121.241.218.70/ASRDb) database that represents the first online available resource providing a comprehensive overview of stress response genes of 66 archaeal genomes. This database currently contains almost 6000 stress specific genes of 66 archaeal genomes. All the stress specific genes are grouped into 17 different stress categories. A user-friendly interface has been designed to examine data using query tools. This database provides an efficient search engine for random and advanced database search operations. We have incorporated BLAST search options to the resulting sequences retrieved from database search operations. A site map page representing the schematic diagram will enable user to understand the logic behind the construction of the database. We have also provided a very rich and informative help page to make user familiar with the database. We sincerely believe that ASRDb will be of particular interest to the life science community and facilitates the biologists to unravel the role of stress specific genes in the adaptation of microorganisms under various extreme environmental conditions.
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spelling pubmed-37250082013-07-31 ASRDb: A comprehensive resource for archaeal stress response genes Labala, Rajendra Kumar Das, Santasabuj Basak, Surajit Bioinformation Database An organism's survival strategy under the constantly changing environment depends on its ability to sense and respond to changes in its environment. Archaea, being capable to grow under various extreme environmental conditions, provide valuable model for exploring how single-celled organisms respond to environmental stresses. However, no such approach has ever been made to make an integrated classification of various archaeal stress responses. Archaeal Stress Response Database (ASRDb) is a web accessible (http://121.241.218.70/ASRDb) database that represents the first online available resource providing a comprehensive overview of stress response genes of 66 archaeal genomes. This database currently contains almost 6000 stress specific genes of 66 archaeal genomes. All the stress specific genes are grouped into 17 different stress categories. A user-friendly interface has been designed to examine data using query tools. This database provides an efficient search engine for random and advanced database search operations. We have incorporated BLAST search options to the resulting sequences retrieved from database search operations. A site map page representing the schematic diagram will enable user to understand the logic behind the construction of the database. We have also provided a very rich and informative help page to make user familiar with the database. We sincerely believe that ASRDb will be of particular interest to the life science community and facilitates the biologists to unravel the role of stress specific genes in the adaptation of microorganisms under various extreme environmental conditions. Biomedical Informatics 2013-07-12 /pmc/articles/PMC3725008/ /pubmed/23904744 http://dx.doi.org/10.6026/97320630009650 Text en © 2013 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Database
Labala, Rajendra Kumar
Das, Santasabuj
Basak, Surajit
ASRDb: A comprehensive resource for archaeal stress response genes
title ASRDb: A comprehensive resource for archaeal stress response genes
title_full ASRDb: A comprehensive resource for archaeal stress response genes
title_fullStr ASRDb: A comprehensive resource for archaeal stress response genes
title_full_unstemmed ASRDb: A comprehensive resource for archaeal stress response genes
title_short ASRDb: A comprehensive resource for archaeal stress response genes
title_sort asrdb: a comprehensive resource for archaeal stress response genes
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725008/
https://www.ncbi.nlm.nih.gov/pubmed/23904744
http://dx.doi.org/10.6026/97320630009650
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