Rapid on-site/in-situ detection of heavy metal ions in environmental water using a structure-switching DNA optical biosensor

A structure-switching DNA optical biosensor for rapid on-site/in situ detection of heavy metal ions is reported. Mercury ions (Hg(2+)), highly toxic and ubiquitous pollutants, were selected as model target. In this system, fluorescence-labeled DNA containing T-T mismatch structure was introduced to bind with DNA probes immobilized onto the sensor surface. In the presence of Hg(2+), some of the fluorescence-labeled DNAs bind with Hg(2+) to form T-Hg(2+)-T complexes through the folding of themselves into a hairpin structure and dehybridization from the sensor surface, which leads to decrease in fluorescence signal. The total analysis time for a single sample was less than 10 min with detection limit of 1.2 nM. The rapid on-site/in situ determination of Hg(2+) was readily performed in natural water. This sensing strategy can be extended in principle to other metal ions by substituting the T-Hg(2+)-T complexes with other specificity structures that selectively bind to other analytes.