Cargando…

Comparison of genotyping using pooled DNA samples (allelotyping) and individual genotyping using the affymetrix genome-wide human SNP array 6.0

BACKGROUND: Genome-wide association studies (GWAS) using array-based genotyping technology are widely used to identify genetic loci associated with complex diseases or other phenotypes. The costs of GWAS projects based on individual genotyping are still comparatively high and increase with the size...

Descripción completa

Detalles Bibliográficos
Autores principales:	Teumer, Alexander, Ernst, Florian D, Wiechert, Anja, Uhr, Katharina, Nauck, Matthias, Petersmann, Astrid, Völzke, Henry, Völker, Uwe, Homuth, Georg
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3727995/ https://www.ncbi.nlm.nih.gov/pubmed/23885805 http://dx.doi.org/10.1186/1471-2164-14-506

Ejemplares similares

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
por: Kirov, George, et al.
Publicado: (2006)

Genotyping and annotation of Affymetrix SNP arrays
por: Lamy, Philippe, et al.
Publicado: (2006)

Validation of pooled genotyping on the Affymetrix 500 k and SNP6.0 genotyping platforms using the polynomial-based probe-specific correction
por: Anantharaman, Ramani, et al.
Publicado: (2009)

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays
por: Chai, High Seng, et al.
Publicado: (2010)

Allelotyping of pooled DNA with 250 K SNP microarrays
por: Wilkening, Stefan, et al.
Publicado: (2007)

Evaluation of pooled allelotyping versus individual genotyping for genome-wide association analysis of complex disease
por: Pratap, Siddharth, et al.
Publicado: (2008)

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals
por: Nishida, Nao, et al.
Publicado: (2008)

Selection of Genome-Wide SNPs for Pooled Allelotyping Assays Useful for Population Monitoring
por: Babineau, Marielle, et al.
Publicado: (2022)

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
por: Eckel-Passow, Jeanette E, et al.
Publicado: (2011)

Hybridization and amplification rate correction for affymetrix SNP arrays
por: Wang, Quan, et al.
Publicado: (2012)

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
por: Huentelman, Matthew J, et al.
Publicado: (2005)

Ancestry-informative markers for African Americans based on the Affymetrix Pan-African genotyping array
por: Zhang, Xu, et al.
Publicado: (2014)

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array
por: Mabire, Clément, et al.
Publicado: (2019)

Equalizer reduces SNP bias in Affymetrix microarrays
por: Quigley, David
Publicado: (2015)

High‐density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool
por: Winfield, Mark O., et al.
Publicado: (2015)

SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks
por: Zhu, Feng, et al.
Publicado: (2016)

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6
por: Bengtsson, Henrik, et al.
Publicado: (2009)

An Axiom SNP genotyping array for Douglas-fir
por: Howe, Glenn T., et al.
Publicado: (2020)

Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
por: More, Manuel, et al.
Publicado: (2019)

Estimating the effect of SNP genotype on quantitative traits from pooled DNA samples
por: Henshall, John M, et al.
Publicado: (2012)

Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array
por: Tørring, N, et al.
Publicado: (2007)

Using DNA pools for genotyping trios
por: Beckman, Kenneth B., et al.
Publicado: (2006)

Scanning and Filling: Ultra-Dense SNP Genotyping Combining Genotyping-By-Sequencing, SNP Array and Whole-Genome Resequencing Data
por: Torkamaneh, Davoud, et al.
Publicado: (2015)

Allelotype analysis of adenocarcinoma of the gastric cardia.
por: Gleeson, C. M., et al.
Publicado: (1997)

Technical Reproducibility of Genotyping SNP Arrays Used in Genome-Wide Association Studies
por: Hong, Huixiao, et al.
Publicado: (2012)

Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays
por: von Thaden, Alina, et al.
Publicado: (2017)

Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans
por: Meaburn, Emma, et al.
Publicado: (2006)

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
por: Lamy, Philippe, et al.
Publicado: (2007)

Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays
por: Smith, Edward M., et al.
Publicado: (2007)

Inter- and intra-reproducibility of genotypes from sheep technical replicates on Illumina and Affymetrix platforms
por: Berry, Donagh P., et al.
Publicado: (2016)

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success
por: Humble, Emily, et al.
Publicado: (2016)

High-Throughput SNP Genotyping
por: Jenkins, Suzanne, et al.
Publicado: (2002)

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
por: Lin, Shin, et al.
Publicado: (2008)

Analysis of Genome-Wide Copy Number Variations in Chinese Indigenous and Western Pig Breeds by 60 K SNP Genotyping Arrays
por: Wang, Yanan, et al.
Publicado: (2014)

Robust SNP genotyping by multiplex PCR and arrayed primer extension
por: Podder, Mohua, et al.
Publicado: (2008)

A new chicken 55K SNP genotyping array
por: Liu, Ranran, et al.
Publicado: (2019)

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays
por: Yeung, J MY, et al.
Publicado: (2008)

Forensic SNP Genotyping using Nanopore MinION Sequencing
por: Cornelis, Senne, et al.
Publicado: (2017)

A Single-Array-Based Method for Detecting Copy Number Variants Using Affymetrix High Density SNP Arrays and its Application to Breast Cancer
por: Li, Ming, et al.
Publicado: (2015)

A genome-wide detection of copy number variations using SNP genotyping arrays in swine
por: Wang, Jiying, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_mm7in9jrd4h601vemfvv5fjj3q