Cargando…
A statistical approach to root system classification
Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant f...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729997/ https://www.ncbi.nlm.nih.gov/pubmed/23914200 http://dx.doi.org/10.3389/fpls.2013.00292 |
_version_ | 1782279012981145600 |
---|---|
author | Bodner, Gernot Leitner, Daniel Nakhforoosh, Alireza Sobotik, Monika Moder, Karl Kaul, Hans-Peter |
author_facet | Bodner, Gernot Leitner, Daniel Nakhforoosh, Alireza Sobotik, Monika Moder, Karl Kaul, Hans-Peter |
author_sort | Bodner, Gernot |
collection | PubMed |
description | Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant functional type” identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential. |
format | Online Article Text |
id | pubmed-3729997 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-37299972013-08-02 A statistical approach to root system classification Bodner, Gernot Leitner, Daniel Nakhforoosh, Alireza Sobotik, Monika Moder, Karl Kaul, Hans-Peter Front Plant Sci Plant Science Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant functional type” identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential. Frontiers Media S.A. 2013-08-01 /pmc/articles/PMC3729997/ /pubmed/23914200 http://dx.doi.org/10.3389/fpls.2013.00292 Text en Copyright © 2013 Bodner, Leitner, Nakhforoosh, Sobotik, Moder and Kaul. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Bodner, Gernot Leitner, Daniel Nakhforoosh, Alireza Sobotik, Monika Moder, Karl Kaul, Hans-Peter A statistical approach to root system classification |
title | A statistical approach to root system classification |
title_full | A statistical approach to root system classification |
title_fullStr | A statistical approach to root system classification |
title_full_unstemmed | A statistical approach to root system classification |
title_short | A statistical approach to root system classification |
title_sort | statistical approach to root system classification |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729997/ https://www.ncbi.nlm.nih.gov/pubmed/23914200 http://dx.doi.org/10.3389/fpls.2013.00292 |
work_keys_str_mv | AT bodnergernot astatisticalapproachtorootsystemclassification AT leitnerdaniel astatisticalapproachtorootsystemclassification AT nakhforooshalireza astatisticalapproachtorootsystemclassification AT sobotikmonika astatisticalapproachtorootsystemclassification AT moderkarl astatisticalapproachtorootsystemclassification AT kaulhanspeter astatisticalapproachtorootsystemclassification AT bodnergernot statisticalapproachtorootsystemclassification AT leitnerdaniel statisticalapproachtorootsystemclassification AT nakhforooshalireza statisticalapproachtorootsystemclassification AT sobotikmonika statisticalapproachtorootsystemclassification AT moderkarl statisticalapproachtorootsystemclassification AT kaulhanspeter statisticalapproachtorootsystemclassification |