Cargando…

Evolution of transcriptional regulation in closely related bacteria

BACKGROUND: The exponential growth of the number of fully sequenced genomes at varying taxonomic closeness allows one to characterize transcriptional regulation using comparative-genomics analysis instead of time-consuming experimental methods. A transcriptional regulatory unit consists of a transcr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tsoy, Olga V, Pyatnitskiy, Mikhail A, Kazanov, Marat D, Gelfand, Mikhail S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3735044/ https://www.ncbi.nlm.nih.gov/pubmed/23039862 http://dx.doi.org/10.1186/1471-2148-12-200

Ejemplares similares

Horizontal gene transfer and genome evolution in Methanosarcina
por: Garushyants, Sofya K., et al.
Publicado: (2015)

Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum
por: Kazanov, Marat D., et al.
Publicado: (2013)

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria
por: Tsoy, Olga V., et al.
Publicado: (2016)

Abundance and functional diversity of riboswitches in microbial communities
por: Kazanov, Marat D, et al.
Publicado: (2007)

Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria
por: Ashniev, German A., et al.
Publicado: (2022)

Comparative genomics and evolution of regulons of the LacI-family transcription factors
por: Ravcheev, Dmitry A., et al.
Publicado: (2014)

Analysis of gene expression and mutation data points on contribution of transcription to the mutagenesis by APOBEC enzymes
por: Chervova, Almira, et al.
Publicado: (2021)

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria
por: Ravcheev, Dmitry A, et al.
Publicado: (2013)

Glutamine versus Ammonia Utilization in the NAD Synthetase Family
por: De Ingeniis, Jessica, et al.
Publicado: (2012)

Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110
por: Hahn, Julia, et al.
Publicado: (2016)

GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution
por: Suvorova, Inna A., et al.
Publicado: (2015)

Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks
por: Rodionov, Dmitry A, et al.
Publicado: (2005)

Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.
por: Bochkareva, Olga O., et al.
Publicado: (2018)

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria
por: Novichkov, Pavel S, et al.
Publicado: (2013)

Comparative Analysis of the IclR-Family of Bacterial Transcription Factors and Their DNA-Binding Motifs: Structure, Positioning, Co-Evolution, Regulon Content
por: Suvorova, Inna A., et al.
Publicado: (2021)

Phospho-islands and the evolution of phosphorylated amino acids in mammals
por: Moldovan, Mikhail, et al.
Publicado: (2020)

APOBEC mutagenesis is low in most types of non-B DNA structures
por: Ponomarev, Gennady V., et al.
Publicado: (2022)

Evolution of the Exon-Intron Structure in Ciliate Genomes
por: Bondarenko, Vladyslav S., et al.
Publicado: (2016)

Predicting Functions of Uncharacterized Human Proteins: From Canonical to Proteoforms
por: Poverennaya, Ekaterina, et al.
Publicado: (2020)

Clustering Gene Expression Regulators: New Approach to Disease Subtyping
por: Pyatnitskiy, Mikhail, et al.
Publicado: (2014)

Micro-evolution of three Streptococcus species: selection, antigenic variation, and horizontal gene inflow
por: Shelyakin, Pavel V., et al.
Publicado: (2019)

Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors
por: Sernova, Natalia V., et al.
Publicado: (2012)

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon
por: Rodionov, Dmitry A., et al.
Publicado: (2008)

Simplification of Ribosomes in Bacteria with Tiny Genomes
por: Nikolaeva, Daria D, et al.
Publicado: (2020)

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria
por: Sun, Eric I, et al.
Publicado: (2013)

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
por: Rodionov, Dmitry A, et al.
Publicado: (2011)

Computational analysis of splicing errors and mutations in human transcripts
por: Kurmangaliyev, Yerbol Z, et al.
Publicado: (2008)

Novel Approach to Meta-Analysis of Microarray Datasets Reveals Muscle Remodeling-related Drug Targets and Biomarkers in Duchenne Muscular Dystrophy
por: Kotelnikova, Ekaterina, et al.
Publicado: (2012)

Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria
por: Leyn, Semen A., et al.
Publicado: (2014)

Comparative Transcriptomic Analysis of Three Common Liver Cell Lines
por: Arzumanian, Viktoriia, et al.
Publicado: (2023)

Recapitulation of the embryonic transcriptional program in holometabolous insect pupae
por: Ozerova, Alexandra M., et al.
Publicado: (2022)

Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine
por: Kotelnikova, Ekaterina A., et al.
Publicado: (2016)

Adaptive evolution at mRNA editing sites in soft-bodied cephalopods
por: Moldovan, Mikhail, et al.
Publicado: (2020)

Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals
por: Stefflova, Klara, et al.
Publicado: (2013)

Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques
por: Mazin, Pavel V., et al.
Publicado: (2018)

Genome regulation in the (so-called) post-genomic era
por: Gelfand, Mikhail S
Publicado: (2000)

Fast rate of evolution in alternatively spliced coding regions of mammalian genes
por: Ermakova, Ekaterina O, et al.
Publicado: (2006)

Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria
por: Adhikari, Satish, et al.
Publicado: (2021)

Genomics of Sponge-Associated Streptomyces spp. Closely Related to Streptomyces albus J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential
por: Ian, Elena, et al.
Publicado: (2014)

Bringing Down Cancer Aircraft: Searching for Essential Hypomutated Proteins in Skin Melanoma
por: Pyatnitskiy, Mikhail, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_sti44q23oev0636a3drgmjilfd