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Dizeez: An Online Game for Human Gene-Disease Annotation

Structured gene annotations are a foundation upon which many bioinformatics and statistical analyses are built. However the structured annotations available in public databases are a sparse representation of biological knowledge as a whole. The rate of biomedical data generation is such that central...

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Detalles Bibliográficos
Autores principales: Loguercio, Salvatore, Good, Benjamin M., Su, Andrew I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737187/
https://www.ncbi.nlm.nih.gov/pubmed/23951102
http://dx.doi.org/10.1371/journal.pone.0071171
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author Loguercio, Salvatore
Good, Benjamin M.
Su, Andrew I.
author_facet Loguercio, Salvatore
Good, Benjamin M.
Su, Andrew I.
author_sort Loguercio, Salvatore
collection PubMed
description Structured gene annotations are a foundation upon which many bioinformatics and statistical analyses are built. However the structured annotations available in public databases are a sparse representation of biological knowledge as a whole. The rate of biomedical data generation is such that centralized biocuration efforts struggle to keep up. New models for gene annotation need to be explored that expand the pace at which we are able to structure biomedical knowledge. Recently, online games have emerged as an effective way to recruit, engage and organize large numbers of volunteers to help address difficult biological challenges. For example, games have been successfully developed for protein folding (Foldit), multiple sequence alignment (Phylo) and RNA structure design (EteRNA). Here we present Dizeez, a simple online game built with the purpose of structuring knowledge of gene-disease associations. Preliminary results from game play online and at scientific conferences suggest that Dizeez is producing valid gene-disease annotations not yet present in any public database. These early results provide a basic proof of principle that online games can be successfully applied to the challenge of gene annotation. Dizeez is available at http://genegames.org.
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spelling pubmed-37371872013-08-15 Dizeez: An Online Game for Human Gene-Disease Annotation Loguercio, Salvatore Good, Benjamin M. Su, Andrew I. PLoS One Research Article Structured gene annotations are a foundation upon which many bioinformatics and statistical analyses are built. However the structured annotations available in public databases are a sparse representation of biological knowledge as a whole. The rate of biomedical data generation is such that centralized biocuration efforts struggle to keep up. New models for gene annotation need to be explored that expand the pace at which we are able to structure biomedical knowledge. Recently, online games have emerged as an effective way to recruit, engage and organize large numbers of volunteers to help address difficult biological challenges. For example, games have been successfully developed for protein folding (Foldit), multiple sequence alignment (Phylo) and RNA structure design (EteRNA). Here we present Dizeez, a simple online game built with the purpose of structuring knowledge of gene-disease associations. Preliminary results from game play online and at scientific conferences suggest that Dizeez is producing valid gene-disease annotations not yet present in any public database. These early results provide a basic proof of principle that online games can be successfully applied to the challenge of gene annotation. Dizeez is available at http://genegames.org. Public Library of Science 2013-08-07 /pmc/articles/PMC3737187/ /pubmed/23951102 http://dx.doi.org/10.1371/journal.pone.0071171 Text en © 2013 Loguercio et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Loguercio, Salvatore
Good, Benjamin M.
Su, Andrew I.
Dizeez: An Online Game for Human Gene-Disease Annotation
title Dizeez: An Online Game for Human Gene-Disease Annotation
title_full Dizeez: An Online Game for Human Gene-Disease Annotation
title_fullStr Dizeez: An Online Game for Human Gene-Disease Annotation
title_full_unstemmed Dizeez: An Online Game for Human Gene-Disease Annotation
title_short Dizeez: An Online Game for Human Gene-Disease Annotation
title_sort dizeez: an online game for human gene-disease annotation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737187/
https://www.ncbi.nlm.nih.gov/pubmed/23951102
http://dx.doi.org/10.1371/journal.pone.0071171
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