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High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))

At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features requir...

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Autores principales: Stackebrandt, Erko, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Han, Cliff, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne A., Bruce, David, Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Huntemann, Marcel, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Rohde, Manfred, Tindall, Brian J., Göker, Markus, Woyke, Tanja, Detter, John C., Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739173/
https://www.ncbi.nlm.nih.gov/pubmed/23961310
http://dx.doi.org/10.4056/sigs.3537045
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author Stackebrandt, Erko
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Han, Cliff
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne A.
Bruce, David
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Huntemann, Marcel
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Woyke, Tanja
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Stackebrandt, Erko
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Han, Cliff
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne A.
Bruce, David
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Huntemann, Marcel
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Woyke, Tanja
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Stackebrandt, Erko
collection PubMed
description At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5(T) complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-37391732013-08-19 High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) Stackebrandt, Erko Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Han, Cliff Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Bruce, David Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Göker, Markus Woyke, Tanja Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5(T) complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2013-04-15 /pmc/articles/PMC3739173/ /pubmed/23961310 http://dx.doi.org/10.4056/sigs.3537045 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Stackebrandt, Erko
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Han, Cliff
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne A.
Bruce, David
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Huntemann, Marcel
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Woyke, Tanja
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title_full High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title_fullStr High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title_full_unstemmed High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title_short High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
title_sort high-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (en5(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739173/
https://www.ncbi.nlm.nih.gov/pubmed/23961310
http://dx.doi.org/10.4056/sigs.3537045
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