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High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T))
At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features requir...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739173/ https://www.ncbi.nlm.nih.gov/pubmed/23961310 http://dx.doi.org/10.4056/sigs.3537045 |
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author | Stackebrandt, Erko Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Han, Cliff Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Bruce, David Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Göker, Markus Woyke, Tanja Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_facet | Stackebrandt, Erko Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Han, Cliff Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Bruce, David Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Göker, Markus Woyke, Tanja Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_sort | Stackebrandt, Erko |
collection | PubMed |
description | At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5(T) complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3739173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-37391732013-08-19 High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) Stackebrandt, Erko Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Han, Cliff Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Bruce, David Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Göker, Markus Woyke, Tanja Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5(T) complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2013-04-15 /pmc/articles/PMC3739173/ /pubmed/23961310 http://dx.doi.org/10.4056/sigs.3537045 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Stackebrandt, Erko Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Han, Cliff Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Bruce, David Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Rohde, Manfred Tindall, Brian J. Göker, Markus Woyke, Tanja Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title | High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title_full | High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title_fullStr | High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title_full_unstemmed | High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title_short | High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)) |
title_sort | high-quality-draft genome sequence of the yellow-pigmented flavobacterium joostella marina type strain (en5(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739173/ https://www.ncbi.nlm.nih.gov/pubmed/23961310 http://dx.doi.org/10.4056/sigs.3537045 |
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