Cargando…
Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T))
Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly published name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Michigan State University
2013
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739176/ https://www.ncbi.nlm.nih.gov/pubmed/23961309 http://dx.doi.org/10.4056/sigs.3527032 |
| _version_ | 1782476923812708352 |
|---|---|
| author | Mavromatis, Konstantinos Stackebrandt, Erko Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Rohde, Manfred Gronow, Sabine Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
| author_facet | Mavromatis, Konstantinos Stackebrandt, Erko Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Rohde, Manfred Gronow, Sabine Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
| author_sort | Mavromatis, Konstantinos |
| collection | PubMed |
| description | Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly published name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe the features of the type strain of this species, together with the complete genome sequence, and annotation. A. finegoldii is the first member of the genus Alistipes for which the complete genome sequence of its type strain is now available. The 3,734,239 bp long single replicon genome with its 3,302 protein-coding and 68 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
| format | Online Article Text |
| id | pubmed-3739176 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2013 |
| publisher | Michigan State University |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-37391762013-08-19 Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) Mavromatis, Konstantinos Stackebrandt, Erko Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Rohde, Manfred Gronow, Sabine Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly published name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe the features of the type strain of this species, together with the complete genome sequence, and annotation. A. finegoldii is the first member of the genus Alistipes for which the complete genome sequence of its type strain is now available. The 3,734,239 bp long single replicon genome with its 3,302 protein-coding and 68 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2013-04-15 /pmc/articles/PMC3739176/ /pubmed/23961309 http://dx.doi.org/10.4056/sigs.3527032 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Short Genome Reports Mavromatis, Konstantinos Stackebrandt, Erko Munk, Christine Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Rohde, Manfred Gronow, Sabine Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title_full | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title_fullStr | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title_full_unstemmed | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title_short | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)) |
| title_sort | complete genome sequence of the bile-resistant pigment-producing anaerobe alistipes finegoldii type strain (ahn2437(t)) |
| topic | Short Genome Reports |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739176/ https://www.ncbi.nlm.nih.gov/pubmed/23961309 http://dx.doi.org/10.4056/sigs.3527032 |
| work_keys_str_mv | AT mavromatiskonstantinos completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT stackebrandterko completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT munkchristine completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT lapidusalla completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT nolanmatt completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT lucassusan completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT hammonnancy completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT deshpandeshweta completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT chengjanfang completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT tapiaroxanne completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT goodwinlynnea completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT pitlucksam completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT liolioskonstantinos completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT paganiioanna completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT ivanovanatalia completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT mikhailovanatalia completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT huntemannmarcel completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT patiamrita completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT chenamy completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT palaniappankrishna completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT landmiriam completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT hauserloren completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT rohdemanfred completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT gronowsabine completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT gokermarkus completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT detterjohnc completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT bristowjames completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT eisenjonathana completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT markowitzvictor completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT hugenholtzphilip completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT kyrpidesnikosc completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT klenkhanspeter completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t AT woyketanja completegenomesequenceofthebileresistantpigmentproducinganaerobealistipesfinegoldiitypestrainahn2437t |