Cargando…
The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis
4-Hydroxylphenylpyruvate dioxygenase (4-HPPD) is an important enzyme for tyrosine catabolism, which catalyzes the conversion of 4-hydroxylphenylpyruvate (4-HPP) to homogentisate. In the present study, human 4-HPPD was cloned and expressed in E. coli. The kinetic parameters for 4-HPP conversion were:...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739788/ https://www.ncbi.nlm.nih.gov/pubmed/23950902 http://dx.doi.org/10.1371/journal.pone.0069733 |
_version_ | 1782476957080879104 |
---|---|
author | Lin, Jang-Foung Sheih, Yung-Lin Chang, Tsu-Chung Chang, Ni-Yuan Chang, Chiung-Wen Shen, Chia-Pei Lee, Hwei-Jen |
author_facet | Lin, Jang-Foung Sheih, Yung-Lin Chang, Tsu-Chung Chang, Ni-Yuan Chang, Chiung-Wen Shen, Chia-Pei Lee, Hwei-Jen |
author_sort | Lin, Jang-Foung |
collection | PubMed |
description | 4-Hydroxylphenylpyruvate dioxygenase (4-HPPD) is an important enzyme for tyrosine catabolism, which catalyzes the conversion of 4-hydroxylphenylpyruvate (4-HPP) to homogentisate. In the present study, human 4-HPPD was cloned and expressed in E. coli. The kinetic parameters for 4-HPP conversion were: k (cat) = 2.2±0.1 s(−1); and K (m) = 0.08±0.02 mM. Sequence alignments show that human 4-HPPD possesses an extended C-terminus compared to other 4-HPPD enzymes. Successive truncation of the disordered tail which follows the final α-helix resulted in no changes in the K (m) value for 4-HPP substrate but the k (cat) values were significantly reduced. The results suggest that this disordered C-terminal tail plays an important role in catalysis. For inspection the effect of terminal truncation on protein structure, mutant models were built. These models suggest that the different conformation of E254, R378 and Q375 in the final helix might be the cause of the activity loss. In the structure E254 interacts with R378, the end residue in the final helix; mutation of either one of these residues causes a ca. 95% reductions in k (cat) values. Q375 provides bifurcate interactions to fix the tail and the final helix in position. The model of the Q375N mutant shows that a solvent accessible channel opens to the putative substrate binding site, suggesting this is responsible for the complete loss of activity. These results highlight the critical role of Q375 in orientating the tail and ensuring the conformation of the terminal α-helix to maintain the integrity of the active site for catalysis. |
format | Online Article Text |
id | pubmed-3739788 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-37397882013-08-15 The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis Lin, Jang-Foung Sheih, Yung-Lin Chang, Tsu-Chung Chang, Ni-Yuan Chang, Chiung-Wen Shen, Chia-Pei Lee, Hwei-Jen PLoS One Research Article 4-Hydroxylphenylpyruvate dioxygenase (4-HPPD) is an important enzyme for tyrosine catabolism, which catalyzes the conversion of 4-hydroxylphenylpyruvate (4-HPP) to homogentisate. In the present study, human 4-HPPD was cloned and expressed in E. coli. The kinetic parameters for 4-HPP conversion were: k (cat) = 2.2±0.1 s(−1); and K (m) = 0.08±0.02 mM. Sequence alignments show that human 4-HPPD possesses an extended C-terminus compared to other 4-HPPD enzymes. Successive truncation of the disordered tail which follows the final α-helix resulted in no changes in the K (m) value for 4-HPP substrate but the k (cat) values were significantly reduced. The results suggest that this disordered C-terminal tail plays an important role in catalysis. For inspection the effect of terminal truncation on protein structure, mutant models were built. These models suggest that the different conformation of E254, R378 and Q375 in the final helix might be the cause of the activity loss. In the structure E254 interacts with R378, the end residue in the final helix; mutation of either one of these residues causes a ca. 95% reductions in k (cat) values. Q375 provides bifurcate interactions to fix the tail and the final helix in position. The model of the Q375N mutant shows that a solvent accessible channel opens to the putative substrate binding site, suggesting this is responsible for the complete loss of activity. These results highlight the critical role of Q375 in orientating the tail and ensuring the conformation of the terminal α-helix to maintain the integrity of the active site for catalysis. Public Library of Science 2013-08-09 /pmc/articles/PMC3739788/ /pubmed/23950902 http://dx.doi.org/10.1371/journal.pone.0069733 Text en © 2013 Lin et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Lin, Jang-Foung Sheih, Yung-Lin Chang, Tsu-Chung Chang, Ni-Yuan Chang, Chiung-Wen Shen, Chia-Pei Lee, Hwei-Jen The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title | The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title_full | The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title_fullStr | The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title_full_unstemmed | The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title_short | The Interactions in the Carboxyl Terminus of Human 4-Hydroxyphenylpyruvate Dioxygenase Are Critical to Mediate the Conformation of the Final Helix and the Tail to Shield the Active Site for Catalysis |
title_sort | interactions in the carboxyl terminus of human 4-hydroxyphenylpyruvate dioxygenase are critical to mediate the conformation of the final helix and the tail to shield the active site for catalysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739788/ https://www.ncbi.nlm.nih.gov/pubmed/23950902 http://dx.doi.org/10.1371/journal.pone.0069733 |
work_keys_str_mv | AT linjangfoung theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT sheihyunglin theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changtsuchung theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changniyuan theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changchiungwen theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT shenchiapei theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT leehweijen theinteractionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT linjangfoung interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT sheihyunglin interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changtsuchung interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changniyuan interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT changchiungwen interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT shenchiapei interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis AT leehweijen interactionsinthecarboxylterminusofhuman4hydroxyphenylpyruvatedioxygenasearecriticaltomediatetheconformationofthefinalhelixandthetailtoshieldtheactivesiteforcatalysis |