Pipit: visualizing functional impacts of structural variations

Summary: Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instanc...

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Detalles Bibliográficos
Autores principales: Sakai, Ryo, Moisse, Matthieu, Reumers, Joke, Aerts, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740631/
https://www.ncbi.nlm.nih.gov/pubmed/23803468
http://dx.doi.org/10.1093/bioinformatics/btt367
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author Sakai, Ryo
Moisse, Matthieu
Reumers, Joke
Aerts, Jan
author_facet Sakai, Ryo
Moisse, Matthieu
Reumers, Joke
Aerts, Jan
author_sort Sakai, Ryo
collection PubMed
description Summary: Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format files. Availability: Executables, source code, sample data, documentation and screencast are available at https://bitbucket.org/biovizleuven/pipit. Contact: ryo.sakai@esat.kuleuven.be Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-37406312013-08-13 Pipit: visualizing functional impacts of structural variations Sakai, Ryo Moisse, Matthieu Reumers, Joke Aerts, Jan Bioinformatics Applications Notes Summary: Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format files. Availability: Executables, source code, sample data, documentation and screencast are available at https://bitbucket.org/biovizleuven/pipit. Contact: ryo.sakai@esat.kuleuven.be Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2013-09-01 2013-06-25 /pmc/articles/PMC3740631/ /pubmed/23803468 http://dx.doi.org/10.1093/bioinformatics/btt367 Text en © The Author 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Sakai, Ryo
Moisse, Matthieu
Reumers, Joke
Aerts, Jan
Pipit: visualizing functional impacts of structural variations
title Pipit: visualizing functional impacts of structural variations
title_full Pipit: visualizing functional impacts of structural variations
title_fullStr Pipit: visualizing functional impacts of structural variations
title_full_unstemmed Pipit: visualizing functional impacts of structural variations
title_short Pipit: visualizing functional impacts of structural variations
title_sort pipit: visualizing functional impacts of structural variations
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740631/
https://www.ncbi.nlm.nih.gov/pubmed/23803468
http://dx.doi.org/10.1093/bioinformatics/btt367
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