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Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases

INTRODUCTION: For both patients and the outpatient clinic the frequent follow-up visits after a resection of colorectal cancer (CRC) are time consuming and due to large patient numbers expensive. Therefore it is important to develop an effective non-invasive test for the detection of colorectal live...

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Autores principales: Bröker, Mirelle E. E., Lalmahomed, Zarina S., Roest, Henk P., van Huizen, Nick A., Dekker, Lennard J. M., Calame, Wim, Verhoef, Cornelis, IJzermans, Jan N. M., Luider, Theo M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3745414/
https://www.ncbi.nlm.nih.gov/pubmed/23976965
http://dx.doi.org/10.1371/journal.pone.0070918
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author Bröker, Mirelle E. E.
Lalmahomed, Zarina S.
Roest, Henk P.
van Huizen, Nick A.
Dekker, Lennard J. M.
Calame, Wim
Verhoef, Cornelis
IJzermans, Jan N. M.
Luider, Theo M.
author_facet Bröker, Mirelle E. E.
Lalmahomed, Zarina S.
Roest, Henk P.
van Huizen, Nick A.
Dekker, Lennard J. M.
Calame, Wim
Verhoef, Cornelis
IJzermans, Jan N. M.
Luider, Theo M.
author_sort Bröker, Mirelle E. E.
collection PubMed
description INTRODUCTION: For both patients and the outpatient clinic the frequent follow-up visits after a resection of colorectal cancer (CRC) are time consuming and due to large patient numbers expensive. Therefore it is important to develop an effective non-invasive test for the detection of colorectal liver metastasis (CRLM) which could be used outside the hospital. The urine proteome is known to provide detailed information for monitoring changes in the physiology of humans. Urine collection is non-invasive and urine naturally occurring peptides (NOPs) have the advantage of being easily accessible without labour-intensive sample preparation. These advantages make it potentially useful for a quick and reliable application in clinical settings. In this study, we will focus on the identification and validation of urine NOPs to discriminate patients with CRLM from healthy controls. MATERIALS AND METHODS: Urine samples were collected from 24 patients with CRLM and 25 healthy controls. In the first part of the study, samples were measured with a nano liquid chromatography (LC) system (Thermo Fisher Scientific, Germaring, Germany) coupled on-line to a hybrid linear ion trap/Orbitrap mass spectrometer (LTQ-Orbitrap-XL, Thermo Fisher Scientific, Bremen, Germany). A discovery set was used to construct the model and consecutively the validation set, being independent from the discovery set, to check the acquired model. From the peptides which were selected, multiple reaction monitoring (MRM's) were developed on a UPLC-MS/MS system. RESULTS: Seven peptides were selected and applied in a discriminant analysis a sensitivity of 84.6% and a specificity of 92.3% were established (Canonical correlation:0.797, Eigenvalue:1.744, F:4.49, p:0.005). The peptides AGPP(-OH)GEAGKP(-OH)GEQGVP(-OH)GDLGA P(-OH)GP and KGNSGEP(-OH)GAPGSKGDTGAKGEP(-OH)GPVG were selected for further quantitative analysis which showed a sensitivity of 88% and a specificity of 88%. CONCLUSION: Urine proteomic analysis revealed two very promising peptides, both part from collagen type 1, AGPP(-OH)GEAGKP(-OH)GEQGVP(-OH)GDLGAP(-OH)GP and KGNSGEP(-OH)GAPGSKGDTGAKGEP(-OH)GPVG which could detect CRLM in a non-invasive manner.
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spelling pubmed-37454142013-08-23 Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases Bröker, Mirelle E. E. Lalmahomed, Zarina S. Roest, Henk P. van Huizen, Nick A. Dekker, Lennard J. M. Calame, Wim Verhoef, Cornelis IJzermans, Jan N. M. Luider, Theo M. PLoS One Research Article INTRODUCTION: For both patients and the outpatient clinic the frequent follow-up visits after a resection of colorectal cancer (CRC) are time consuming and due to large patient numbers expensive. Therefore it is important to develop an effective non-invasive test for the detection of colorectal liver metastasis (CRLM) which could be used outside the hospital. The urine proteome is known to provide detailed information for monitoring changes in the physiology of humans. Urine collection is non-invasive and urine naturally occurring peptides (NOPs) have the advantage of being easily accessible without labour-intensive sample preparation. These advantages make it potentially useful for a quick and reliable application in clinical settings. In this study, we will focus on the identification and validation of urine NOPs to discriminate patients with CRLM from healthy controls. MATERIALS AND METHODS: Urine samples were collected from 24 patients with CRLM and 25 healthy controls. In the first part of the study, samples were measured with a nano liquid chromatography (LC) system (Thermo Fisher Scientific, Germaring, Germany) coupled on-line to a hybrid linear ion trap/Orbitrap mass spectrometer (LTQ-Orbitrap-XL, Thermo Fisher Scientific, Bremen, Germany). A discovery set was used to construct the model and consecutively the validation set, being independent from the discovery set, to check the acquired model. From the peptides which were selected, multiple reaction monitoring (MRM's) were developed on a UPLC-MS/MS system. RESULTS: Seven peptides were selected and applied in a discriminant analysis a sensitivity of 84.6% and a specificity of 92.3% were established (Canonical correlation:0.797, Eigenvalue:1.744, F:4.49, p:0.005). The peptides AGPP(-OH)GEAGKP(-OH)GEQGVP(-OH)GDLGA P(-OH)GP and KGNSGEP(-OH)GAPGSKGDTGAKGEP(-OH)GPVG were selected for further quantitative analysis which showed a sensitivity of 88% and a specificity of 88%. CONCLUSION: Urine proteomic analysis revealed two very promising peptides, both part from collagen type 1, AGPP(-OH)GEAGKP(-OH)GEQGVP(-OH)GDLGAP(-OH)GP and KGNSGEP(-OH)GAPGSKGDTGAKGEP(-OH)GPVG which could detect CRLM in a non-invasive manner. Public Library of Science 2013-08-16 /pmc/articles/PMC3745414/ /pubmed/23976965 http://dx.doi.org/10.1371/journal.pone.0070918 Text en © 2013 Bröker et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Bröker, Mirelle E. E.
Lalmahomed, Zarina S.
Roest, Henk P.
van Huizen, Nick A.
Dekker, Lennard J. M.
Calame, Wim
Verhoef, Cornelis
IJzermans, Jan N. M.
Luider, Theo M.
Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title_full Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title_fullStr Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title_full_unstemmed Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title_short Collagen Peptides in Urine: A New Promising Biomarker for the Detection of Colorectal Liver Metastases
title_sort collagen peptides in urine: a new promising biomarker for the detection of colorectal liver metastases
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3745414/
https://www.ncbi.nlm.nih.gov/pubmed/23976965
http://dx.doi.org/10.1371/journal.pone.0070918
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