Cargando…
Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T))
Salinicoccus carnicancri Jung et al. 2010 belongs to the genus Salinicoccus in the family Staphylococcaceae. Members of the Salinicoccus are moderately halophilic and originate from various salty environments. The halophilic features of the Salinicoccus suggest their possible uses in biotechnologica...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746416/ https://www.ncbi.nlm.nih.gov/pubmed/23991257 http://dx.doi.org/10.4056/sigs.3967649 |
_version_ | 1782280820265844736 |
---|---|
author | Hyun, Dong-Wook Whon, Tae Woong Cho, Yong-Joon Chun, Jongsik Kim, Min-Soo Jung, Mi-Ja Shin, Na-Ri Kim, Joon-Yong Kim, Pil Soo Yun, Ji-Hyun Lee, Jina Oh, Sei Joon Bae, Jin-Woo |
author_facet | Hyun, Dong-Wook Whon, Tae Woong Cho, Yong-Joon Chun, Jongsik Kim, Min-Soo Jung, Mi-Ja Shin, Na-Ri Kim, Joon-Yong Kim, Pil Soo Yun, Ji-Hyun Lee, Jina Oh, Sei Joon Bae, Jin-Woo |
author_sort | Hyun, Dong-Wook |
collection | PubMed |
description | Salinicoccus carnicancri Jung et al. 2010 belongs to the genus Salinicoccus in the family Staphylococcaceae. Members of the Salinicoccus are moderately halophilic and originate from various salty environments. The halophilic features of the Salinicoccus suggest their possible uses in biotechnological applications, such as biodegradation and fermented food production. However, the genus Salinicoccus is poorly characterized at the genome level, despite its potential importance. This study presents the draft genome sequence of S. carnicancri strain Crm(T) and its annotation. The 2,673,309 base pair genome contained 2,700 protein-coding genes and 78 RNA genes with an average G+C content of 47.93 mol%. It was notable that the strain carried 72 predicted genes associated with osmoregulation, which suggests the presence of beneficial functions that facilitate growth in high-salt environments. |
format | Online Article Text |
id | pubmed-3746416 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-37464162013-08-29 Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) Hyun, Dong-Wook Whon, Tae Woong Cho, Yong-Joon Chun, Jongsik Kim, Min-Soo Jung, Mi-Ja Shin, Na-Ri Kim, Joon-Yong Kim, Pil Soo Yun, Ji-Hyun Lee, Jina Oh, Sei Joon Bae, Jin-Woo Stand Genomic Sci Short Genome Reports Salinicoccus carnicancri Jung et al. 2010 belongs to the genus Salinicoccus in the family Staphylococcaceae. Members of the Salinicoccus are moderately halophilic and originate from various salty environments. The halophilic features of the Salinicoccus suggest their possible uses in biotechnological applications, such as biodegradation and fermented food production. However, the genus Salinicoccus is poorly characterized at the genome level, despite its potential importance. This study presents the draft genome sequence of S. carnicancri strain Crm(T) and its annotation. The 2,673,309 base pair genome contained 2,700 protein-coding genes and 78 RNA genes with an average G+C content of 47.93 mol%. It was notable that the strain carried 72 predicted genes associated with osmoregulation, which suggests the presence of beneficial functions that facilitate growth in high-salt environments. Michigan State University 2013-06-03 /pmc/articles/PMC3746416/ /pubmed/23991257 http://dx.doi.org/10.4056/sigs.3967649 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Hyun, Dong-Wook Whon, Tae Woong Cho, Yong-Joon Chun, Jongsik Kim, Min-Soo Jung, Mi-Ja Shin, Na-Ri Kim, Joon-Yong Kim, Pil Soo Yun, Ji-Hyun Lee, Jina Oh, Sei Joon Bae, Jin-Woo Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title | Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title_full | Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title_fullStr | Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title_full_unstemmed | Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title_short | Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)) |
title_sort | genome sequence of the moderately halophilic bacterium salinicoccus carnicancri type strain crm(t) (= dsm 23852(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746416/ https://www.ncbi.nlm.nih.gov/pubmed/23991257 http://dx.doi.org/10.4056/sigs.3967649 |
work_keys_str_mv | AT hyundongwook genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT whontaewoong genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT choyongjoon genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT chunjongsik genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT kimminsoo genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT jungmija genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT shinnari genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT kimjoonyong genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT kimpilsoo genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT yunjihyun genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT leejina genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT ohseijoon genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t AT baejinwoo genomesequenceofthemoderatelyhalophilicbacteriumsalinicoccuscarnicancritypestraincrmtdsm23852t |