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Complete genome sequence of Halorhodospira halophila SL1
Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746430/ https://www.ncbi.nlm.nih.gov/pubmed/23991253 http://dx.doi.org/10.4056/sigs.3677284 |
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author | Challacombe, Jean F. Majid, Sophia Deole, Ratnakar Brettin, Thomas S. Bruce, David Delano, Susana F. Detter, John C. Gleasner, Cheryl D. Han, Cliff S. Misra, Monica Reitenga, Krista G. Mikhailova, Natalia Woyke, Tanja Pitluck, Sam Nolan, Matt Land, Miriam L. Saunders, Elizabeth Tapia, Roxanne Lapidus, Alla Ivanova, Natalia Hoff, Wouter D. |
author_facet | Challacombe, Jean F. Majid, Sophia Deole, Ratnakar Brettin, Thomas S. Bruce, David Delano, Susana F. Detter, John C. Gleasner, Cheryl D. Han, Cliff S. Misra, Monica Reitenga, Krista G. Mikhailova, Natalia Woyke, Tanja Pitluck, Sam Nolan, Matt Land, Miriam L. Saunders, Elizabeth Tapia, Roxanne Lapidus, Alla Ivanova, Natalia Hoff, Wouter D. |
author_sort | Challacombe, Jean F. |
collection | PubMed |
description | Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2,493 predicted genes as determined by automated genome annotation. Of the 2,407 predicted proteins, 1,905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism. |
format | Online Article Text |
id | pubmed-3746430 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-37464302013-08-29 Complete genome sequence of Halorhodospira halophila SL1 Challacombe, Jean F. Majid, Sophia Deole, Ratnakar Brettin, Thomas S. Bruce, David Delano, Susana F. Detter, John C. Gleasner, Cheryl D. Han, Cliff S. Misra, Monica Reitenga, Krista G. Mikhailova, Natalia Woyke, Tanja Pitluck, Sam Nolan, Matt Land, Miriam L. Saunders, Elizabeth Tapia, Roxanne Lapidus, Alla Ivanova, Natalia Hoff, Wouter D. Stand Genomic Sci Short Genome Reports Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2,493 predicted genes as determined by automated genome annotation. Of the 2,407 predicted proteins, 1,905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism. Michigan State University 2013-04-15 /pmc/articles/PMC3746430/ /pubmed/23991253 http://dx.doi.org/10.4056/sigs.3677284 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Challacombe, Jean F. Majid, Sophia Deole, Ratnakar Brettin, Thomas S. Bruce, David Delano, Susana F. Detter, John C. Gleasner, Cheryl D. Han, Cliff S. Misra, Monica Reitenga, Krista G. Mikhailova, Natalia Woyke, Tanja Pitluck, Sam Nolan, Matt Land, Miriam L. Saunders, Elizabeth Tapia, Roxanne Lapidus, Alla Ivanova, Natalia Hoff, Wouter D. Complete genome sequence of Halorhodospira halophila SL1 |
title | Complete genome sequence of Halorhodospira halophila SL1 |
title_full | Complete genome sequence of Halorhodospira halophila SL1 |
title_fullStr | Complete genome sequence of Halorhodospira halophila SL1 |
title_full_unstemmed | Complete genome sequence of Halorhodospira halophila SL1 |
title_short | Complete genome sequence of Halorhodospira halophila SL1 |
title_sort | complete genome sequence of halorhodospira halophila sl1 |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746430/ https://www.ncbi.nlm.nih.gov/pubmed/23991253 http://dx.doi.org/10.4056/sigs.3677284 |
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