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Complete genome sequence of Halorhodospira halophila SL1

Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here...

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Autores principales: Challacombe, Jean F., Majid, Sophia, Deole, Ratnakar, Brettin, Thomas S., Bruce, David, Delano, Susana F., Detter, John C., Gleasner, Cheryl D., Han, Cliff S., Misra, Monica, Reitenga, Krista G., Mikhailova, Natalia, Woyke, Tanja, Pitluck, Sam, Nolan, Matt, Land, Miriam L., Saunders, Elizabeth, Tapia, Roxanne, Lapidus, Alla, Ivanova, Natalia, Hoff, Wouter D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746430/
https://www.ncbi.nlm.nih.gov/pubmed/23991253
http://dx.doi.org/10.4056/sigs.3677284
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author Challacombe, Jean F.
Majid, Sophia
Deole, Ratnakar
Brettin, Thomas S.
Bruce, David
Delano, Susana F.
Detter, John C.
Gleasner, Cheryl D.
Han, Cliff S.
Misra, Monica
Reitenga, Krista G.
Mikhailova, Natalia
Woyke, Tanja
Pitluck, Sam
Nolan, Matt
Land, Miriam L.
Saunders, Elizabeth
Tapia, Roxanne
Lapidus, Alla
Ivanova, Natalia
Hoff, Wouter D.
author_facet Challacombe, Jean F.
Majid, Sophia
Deole, Ratnakar
Brettin, Thomas S.
Bruce, David
Delano, Susana F.
Detter, John C.
Gleasner, Cheryl D.
Han, Cliff S.
Misra, Monica
Reitenga, Krista G.
Mikhailova, Natalia
Woyke, Tanja
Pitluck, Sam
Nolan, Matt
Land, Miriam L.
Saunders, Elizabeth
Tapia, Roxanne
Lapidus, Alla
Ivanova, Natalia
Hoff, Wouter D.
author_sort Challacombe, Jean F.
collection PubMed
description Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2,493 predicted genes as determined by automated genome annotation. Of the 2,407 predicted proteins, 1,905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism.
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spelling pubmed-37464302013-08-29 Complete genome sequence of Halorhodospira halophila SL1 Challacombe, Jean F. Majid, Sophia Deole, Ratnakar Brettin, Thomas S. Bruce, David Delano, Susana F. Detter, John C. Gleasner, Cheryl D. Han, Cliff S. Misra, Monica Reitenga, Krista G. Mikhailova, Natalia Woyke, Tanja Pitluck, Sam Nolan, Matt Land, Miriam L. Saunders, Elizabeth Tapia, Roxanne Lapidus, Alla Ivanova, Natalia Hoff, Wouter D. Stand Genomic Sci Short Genome Reports Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type strain H. halophila SL1 was isolated from a hypersaline lake in Oregon. Here we report the determination of its entire genome in a single contig. This is the first genome of a phototrophic extreme halophile. The genome consists of 2,678,452 bp, encoding 2,493 predicted genes as determined by automated genome annotation. Of the 2,407 predicted proteins, 1,905 were assigned to a putative function. Future detailed analysis of this genome promises to yield insights into the halophilic adaptations of this organism, its ability for photoautotrophic growth under extreme conditions, and its characteristic sulfur metabolism. Michigan State University 2013-04-15 /pmc/articles/PMC3746430/ /pubmed/23991253 http://dx.doi.org/10.4056/sigs.3677284 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Challacombe, Jean F.
Majid, Sophia
Deole, Ratnakar
Brettin, Thomas S.
Bruce, David
Delano, Susana F.
Detter, John C.
Gleasner, Cheryl D.
Han, Cliff S.
Misra, Monica
Reitenga, Krista G.
Mikhailova, Natalia
Woyke, Tanja
Pitluck, Sam
Nolan, Matt
Land, Miriam L.
Saunders, Elizabeth
Tapia, Roxanne
Lapidus, Alla
Ivanova, Natalia
Hoff, Wouter D.
Complete genome sequence of Halorhodospira halophila SL1
title Complete genome sequence of Halorhodospira halophila SL1
title_full Complete genome sequence of Halorhodospira halophila SL1
title_fullStr Complete genome sequence of Halorhodospira halophila SL1
title_full_unstemmed Complete genome sequence of Halorhodospira halophila SL1
title_short Complete genome sequence of Halorhodospira halophila SL1
title_sort complete genome sequence of halorhodospira halophila sl1
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746430/
https://www.ncbi.nlm.nih.gov/pubmed/23991253
http://dx.doi.org/10.4056/sigs.3677284
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