Cargando…

Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates

Models of competitive template replication, although basic for replicator dynamics and primordial evolution, have not yet taken different sequences explicitly into account, neither have they analyzed the effect of resource partitioning (feeding on different resources) on coexistence. Here we show by...

Descripción completa

Detalles Bibliográficos
Autores principales: Szilágyi, András, Zachar, István, Szathmáry, Eörs
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3749944/
https://www.ncbi.nlm.nih.gov/pubmed/23990769
http://dx.doi.org/10.1371/journal.pcbi.1003193
_version_ 1782477047349641216
author Szilágyi, András
Zachar, István
Szathmáry, Eörs
author_facet Szilágyi, András
Zachar, István
Szathmáry, Eörs
author_sort Szilágyi, András
collection PubMed
description Models of competitive template replication, although basic for replicator dynamics and primordial evolution, have not yet taken different sequences explicitly into account, neither have they analyzed the effect of resource partitioning (feeding on different resources) on coexistence. Here we show by analytical and numerical calculations that Gause's principle of competitive exclusion holds for template replicators if resources (nucleotides) affect growth linearly and coexistence is at fixed point attractors. Cases of complementary or homologous pairing between building blocks with parallel or antiparallel strands show no deviation from the rule that the nucleotide compositions of stably coexisting species must be different and there cannot be more coexisting replicator species than nucleotide types. Besides this overlooked mechanism of template coexistence we show also that interesting sequence effects prevail as parts of sequences that are copied earlier affect coexistence more strongly due to the higher concentration of the corresponding replication intermediates. Template and copy always count as one species due their constraint of strict stoichiometric coupling. Stability of fixed-point coexistence tends to decrease with the length of sequences, although this effect is unlikely to be detrimental for sequences below 100 nucleotides. In sum, resource partitioning (niche differentiation) is the default form of competitive coexistence for replicating templates feeding on a cocktail of different nucleotides, as it may have been the case in the RNA world. Our analysis of different pairing and strand orientation schemes is relevant for artificial and potentially astrobiological genetics.
format Online
Article
Text
id pubmed-3749944
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-37499442013-08-29 Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates Szilágyi, András Zachar, István Szathmáry, Eörs PLoS Comput Biol Research Article Models of competitive template replication, although basic for replicator dynamics and primordial evolution, have not yet taken different sequences explicitly into account, neither have they analyzed the effect of resource partitioning (feeding on different resources) on coexistence. Here we show by analytical and numerical calculations that Gause's principle of competitive exclusion holds for template replicators if resources (nucleotides) affect growth linearly and coexistence is at fixed point attractors. Cases of complementary or homologous pairing between building blocks with parallel or antiparallel strands show no deviation from the rule that the nucleotide compositions of stably coexisting species must be different and there cannot be more coexisting replicator species than nucleotide types. Besides this overlooked mechanism of template coexistence we show also that interesting sequence effects prevail as parts of sequences that are copied earlier affect coexistence more strongly due to the higher concentration of the corresponding replication intermediates. Template and copy always count as one species due their constraint of strict stoichiometric coupling. Stability of fixed-point coexistence tends to decrease with the length of sequences, although this effect is unlikely to be detrimental for sequences below 100 nucleotides. In sum, resource partitioning (niche differentiation) is the default form of competitive coexistence for replicating templates feeding on a cocktail of different nucleotides, as it may have been the case in the RNA world. Our analysis of different pairing and strand orientation schemes is relevant for artificial and potentially astrobiological genetics. Public Library of Science 2013-08-22 /pmc/articles/PMC3749944/ /pubmed/23990769 http://dx.doi.org/10.1371/journal.pcbi.1003193 Text en © 2013 Szilágyi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Szilágyi, András
Zachar, István
Szathmáry, Eörs
Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title_full Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title_fullStr Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title_full_unstemmed Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title_short Gause's Principle and the Effect of Resource Partitioning on the Dynamical Coexistence of Replicating Templates
title_sort gause's principle and the effect of resource partitioning on the dynamical coexistence of replicating templates
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3749944/
https://www.ncbi.nlm.nih.gov/pubmed/23990769
http://dx.doi.org/10.1371/journal.pcbi.1003193
work_keys_str_mv AT szilagyiandras gausesprincipleandtheeffectofresourcepartitioningonthedynamicalcoexistenceofreplicatingtemplates
AT zacharistvan gausesprincipleandtheeffectofresourcepartitioningonthedynamicalcoexistenceofreplicatingtemplates
AT szathmaryeors gausesprincipleandtheeffectofresourcepartitioningonthedynamicalcoexistenceofreplicatingtemplates