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Effects of multimerization on the temporal variability of protein complex abundance

We explore whether the process of multimerization can be used as a means to regulate noise in the abundance of functional protein complexes. Additionally, we analyze how this process affects the mean level of these functional units, response time of a gene, and temporal correlation between the numbe...

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Autores principales: Häkkinen, Antti, Tran, Huy, Yli-Harja, Olli, Ingalls, Brian, Ribeiro, Andre S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750523/
https://www.ncbi.nlm.nih.gov/pubmed/24267954
http://dx.doi.org/10.1186/1752-0509-7-S1-S3
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author Häkkinen, Antti
Tran, Huy
Yli-Harja, Olli
Ingalls, Brian
Ribeiro, Andre S
author_facet Häkkinen, Antti
Tran, Huy
Yli-Harja, Olli
Ingalls, Brian
Ribeiro, Andre S
author_sort Häkkinen, Antti
collection PubMed
description We explore whether the process of multimerization can be used as a means to regulate noise in the abundance of functional protein complexes. Additionally, we analyze how this process affects the mean level of these functional units, response time of a gene, and temporal correlation between the numbers of expressed proteins and of the functional multimers. We show that, although multimerization increases noise by reducing the mean number of functional complexes it can reduce noise in comparison with a monomer, when abundance of the functional proteins are comparable. Alternatively, reduction in noise occurs if both monomeric and multimeric forms of the protein are functional. Moreover, we find that multimerization either increases the response time to external signals or decreases the correlation between number of functional complexes and protein production kinetics. Finally, we show that the results are in agreement with recent genome-wide assessments of cell-to-cell variability in protein numbers and of multimerization in essential and non-essential genes in Escherichia coli, and that the effects of multimerization are tangible at the level of genetic circuits.
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spelling pubmed-37505232013-08-27 Effects of multimerization on the temporal variability of protein complex abundance Häkkinen, Antti Tran, Huy Yli-Harja, Olli Ingalls, Brian Ribeiro, Andre S BMC Syst Biol Research We explore whether the process of multimerization can be used as a means to regulate noise in the abundance of functional protein complexes. Additionally, we analyze how this process affects the mean level of these functional units, response time of a gene, and temporal correlation between the numbers of expressed proteins and of the functional multimers. We show that, although multimerization increases noise by reducing the mean number of functional complexes it can reduce noise in comparison with a monomer, when abundance of the functional proteins are comparable. Alternatively, reduction in noise occurs if both monomeric and multimeric forms of the protein are functional. Moreover, we find that multimerization either increases the response time to external signals or decreases the correlation between number of functional complexes and protein production kinetics. Finally, we show that the results are in agreement with recent genome-wide assessments of cell-to-cell variability in protein numbers and of multimerization in essential and non-essential genes in Escherichia coli, and that the effects of multimerization are tangible at the level of genetic circuits. BioMed Central 2013-08-12 /pmc/articles/PMC3750523/ /pubmed/24267954 http://dx.doi.org/10.1186/1752-0509-7-S1-S3 Text en Copyright © 2013 Häkkinen et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Häkkinen, Antti
Tran, Huy
Yli-Harja, Olli
Ingalls, Brian
Ribeiro, Andre S
Effects of multimerization on the temporal variability of protein complex abundance
title Effects of multimerization on the temporal variability of protein complex abundance
title_full Effects of multimerization on the temporal variability of protein complex abundance
title_fullStr Effects of multimerization on the temporal variability of protein complex abundance
title_full_unstemmed Effects of multimerization on the temporal variability of protein complex abundance
title_short Effects of multimerization on the temporal variability of protein complex abundance
title_sort effects of multimerization on the temporal variability of protein complex abundance
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750523/
https://www.ncbi.nlm.nih.gov/pubmed/24267954
http://dx.doi.org/10.1186/1752-0509-7-S1-S3
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