Cargando…

A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana

The circadian clock is an important molecular mechanism that enables many organisms to anticipate and adapt to environmental change. Pokhilko et al. recently built a deterministic ODE mathematical model of the plant circadian clock in order to understand the behaviour, mechanisms and properties of t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Higham, Catherine F, Husmeier, Dirk
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750527/ https://www.ncbi.nlm.nih.gov/pubmed/24267177 http://dx.doi.org/10.1186/1471-2105-14-S10-S3

Ejemplares similares

The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana
por: Krahmer, Johanna, et al.
Publicado: (2021)

Mathematical modeling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thaliana
por: Bujdoso, Nora, et al.
Publicado: (2013)

Finding Clocks in Genes: A Bayesian Approach to Estimate Periodicity
por: Ren, Yan, et al.
Publicado: (2016)

QTL Underlying Circadian Clock Parameters Under Seasonally Variable Field Settings in Arabidopsis thaliana
por: Rubin, Matthew J., et al.
Publicado: (2019)

Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle
por: Borowska, Agnieszka, et al.
Publicado: (2022)

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
por: Pokhilko, Alexandra, et al.
Publicado: (2012)

An auxin-regulable oscillatory circuit drives the root clock in Arabidopsis
por: Perianez-Rodriguez, Juan, et al.
Publicado: (2021)

Approximate Bayesian inference in semi-mechanistic models
por: Aderhold, Andrej, et al.
Publicado: (2016)

Defence Responses of Arabidopsis thaliana to Infection by Pseudomonas syringae Are Regulated by the Circadian Clock
por: Bhardwaj, Vaibhav, et al.
Publicado: (2011)

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana
por: Voß, Ute, et al.
Publicado: (2015)

Modelling Transcriptional Regulation with a Mixture of Factor Analyzers and Variational Bayesian Expectation Maximization
por: Lin, Kuang, et al.
Publicado: (2009)

Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana
por: Locke, James C W, et al.
Publicado: (2006)

Markov chain Monte Carlo with Gaussian processes for fast parameter estimation and uncertainty quantification in a 1D fluid‐dynamics model of the pulmonary circulation
por: Paun, L. Mihaela, et al.
Publicado: (2020)

Parameters of Starch Granule Genesis in Chloroplasts of Arabidopsis thaliana
por: Malinova, Irina, et al.
Publicado: (2018)

Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves
por: Brandt, Saskia, et al.
Publicado: (2018)

The LNK1 night light-inducible and clock-regulated gene is induced also in response to warm-night through the circadian clock nighttime repressor in Arabidopsis thaliana
por: Mizuno, Takeshi, et al.
Publicado: (2014)

Stochastic gene expression in Arabidopsis thaliana
por: Araújo, Ilka Schultheiß, et al.
Publicado: (2017)

A Bayesian Approach to the Estimation of Parameters and Their Interdependencies in Environmental Modeling †
por: Albert, Christopher G., et al.
Publicado: (2022)

Variational Bayesian Parameter Estimation Techniques for the General Linear Model
por: Starke, Ludger, et al.
Publicado: (2017)

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana
por: Hundertmark, Michaela, et al.
Publicado: (2008)

Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family
por: Rautengarten, Carsten, et al.
Publicado: (2005)

Bayesian inference: parameter estimation and decisions
por: Harney, Hanns L
Publicado: (2003)

Bayesian spectrum analysis and parameter estimation
por: Bre3rdorst, G Larry
Publicado: (1988)

The Impacts of TRR14-Overexpression on Arabidopsis thaliana Growth and Photosynthetic Parameters
por: Rezapoor, Habib, et al.
Publicado: (2017)

Carbon partitioning in Arabidopsis thaliana is a dynamic process controlled by the plants metabolic status and its circadian clock
por: Kölling, Katharina, et al.
Publicado: (2015)

Regulation of metabolic gene clusters in Arabidopsis thaliana
por: Nützmann, Hans-Wilhelm, et al.
Publicado: (2015)

Polycomb-Mediated Gene Silencing in Arabidopsis thaliana
por: Kim, Dong-Hwan, et al.
Publicado: (2014)

Linking genes with ecological strategies in Arabidopsis thaliana
por: Takou, Margarita, et al.
Publicado: (2019)

Functional Gene Network of Prenyltransferases in Arabidopsis thaliana
por: Kopcsayová, Diana, et al.
Publicado: (2019)

Interactome of Arabidopsis Thaliana
por: Yilmaz, Merve, et al.
Publicado: (2022)

A Global Survey of Gene Regulation during Cold Acclimation in Arabidopsis thaliana
por: Hannah, Matthew A, et al.
Publicado: (2005)

Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes
por: Calixto, Cristiane P. G., et al.
Publicado: (2015)

Combining growth-promoting genes leads to positive epistasis in Arabidopsis thaliana
por: Vanhaeren, Hannes, et al.
Publicado: (2014)

A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters
por: Hanano, Shigeru, et al.
Publicado: (2008)

Cuscuta australis Parasitism-Induced Changes in the Proteome and Photosynthetic Parameters of Arabidopsis thaliana
por: Zagorchev, Lyuben, et al.
Publicado: (2022)

A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis
por: Moubayidin, Laila, et al.
Publicado: (2016)

A Joint-Parameter Estimation and Bayesian Reconstruction Approach to Low-Dose CT †
por: Gao, Yongfeng, et al.
Publicado: (2023)

Improving the identification of antigenic sites in the H1N1 influenza virus through accounting for the experimental structure in a sparse hierarchical Bayesian model
por: Davies, Vinny, et al.
Publicado: (2019)

Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana
por: Zogopoulos, Vasileios L., et al.
Publicado: (2021)

From gene expression to gene regulatory networks in Arabidopsis thaliana
por: Needham, Chris J, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_bchq8gdjmqqbfai7mb52i1u6j9