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4273π: Bioinformatics education on low cost ARM hardware

BACKGROUND: Teaching bioinformatics at universities is complicated by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. For a future career in biology or bioinformatics, the installation of software is a us...

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Autores principales: Barker, Daniel, Ferrier, David EK, Holland, Peter WH, Mitchell, John BO, Plaisier, Heleen, Ritchie, Michael G, Smart, Steven D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751261/
https://www.ncbi.nlm.nih.gov/pubmed/23937194
http://dx.doi.org/10.1186/1471-2105-14-243
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author Barker, Daniel
Ferrier, David EK
Holland, Peter WH
Mitchell, John BO
Plaisier, Heleen
Ritchie, Michael G
Smart, Steven D
author_facet Barker, Daniel
Ferrier, David EK
Holland, Peter WH
Mitchell, John BO
Plaisier, Heleen
Ritchie, Michael G
Smart, Steven D
author_sort Barker, Daniel
collection PubMed
description BACKGROUND: Teaching bioinformatics at universities is complicated by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. For a future career in biology or bioinformatics, the installation of software is a useful skill. We propose that this may be taught by running the course on GNU/Linux running on inexpensive Raspberry Pi computer hardware, for which students may be granted full administrator access. RESULTS: We release 4273π, an operating system image for Raspberry Pi based on Raspbian Linux. This includes minor customisations for classroom use and includes our Open Access bioinformatics course, 4273π Bioinformatics for Biologists. This is based on the final-year undergraduate module BL4273, run on Raspberry Pi computers at the University of St Andrews, Semester 1, academic year 2012–2013. CONCLUSIONS: 4273π is a means to teach bioinformatics, including systems administration tasks, to undergraduates at low cost.
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spelling pubmed-37512612013-08-24 4273π: Bioinformatics education on low cost ARM hardware Barker, Daniel Ferrier, David EK Holland, Peter WH Mitchell, John BO Plaisier, Heleen Ritchie, Michael G Smart, Steven D BMC Bioinformatics Software BACKGROUND: Teaching bioinformatics at universities is complicated by typical computer classroom settings. As well as running software locally and online, students should gain experience of systems administration. For a future career in biology or bioinformatics, the installation of software is a useful skill. We propose that this may be taught by running the course on GNU/Linux running on inexpensive Raspberry Pi computer hardware, for which students may be granted full administrator access. RESULTS: We release 4273π, an operating system image for Raspberry Pi based on Raspbian Linux. This includes minor customisations for classroom use and includes our Open Access bioinformatics course, 4273π Bioinformatics for Biologists. This is based on the final-year undergraduate module BL4273, run on Raspberry Pi computers at the University of St Andrews, Semester 1, academic year 2012–2013. CONCLUSIONS: 4273π is a means to teach bioinformatics, including systems administration tasks, to undergraduates at low cost. BioMed Central 2013-08-12 /pmc/articles/PMC3751261/ /pubmed/23937194 http://dx.doi.org/10.1186/1471-2105-14-243 Text en Copyright © 2013 Barker et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Barker, Daniel
Ferrier, David EK
Holland, Peter WH
Mitchell, John BO
Plaisier, Heleen
Ritchie, Michael G
Smart, Steven D
4273π: Bioinformatics education on low cost ARM hardware
title 4273π: Bioinformatics education on low cost ARM hardware
title_full 4273π: Bioinformatics education on low cost ARM hardware
title_fullStr 4273π: Bioinformatics education on low cost ARM hardware
title_full_unstemmed 4273π: Bioinformatics education on low cost ARM hardware
title_short 4273π: Bioinformatics education on low cost ARM hardware
title_sort 4273π: bioinformatics education on low cost arm hardware
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751261/
https://www.ncbi.nlm.nih.gov/pubmed/23937194
http://dx.doi.org/10.1186/1471-2105-14-243
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