Cargando…
Scalable metagenomic taxonomy classification using a reference genome database
Motivation: Deep metagenomic sequencing of biological samples has the potential to recover otherwise difficult-to-detect microorganisms and accurately characterize biological samples with limited prior knowledge of sample contents. Existing metagenomic taxonomic classification algorithms, however, d...
Autores principales: | Ames, Sasha K., Hysom, David A., Gardner, Shea N., Lloyd, G. Scott, Gokhale, Maya B., Allen, Jonathan E. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753567/ https://www.ncbi.nlm.nih.gov/pubmed/23828782 http://dx.doi.org/10.1093/bioinformatics/btt389 |
Ejemplares similares
-
Using populations of human and microbial genomes for organism detection in metagenomes
por: Ames, Sasha K., et al.
Publicado: (2015) -
The use of taxon-specific reference databases compromises metagenomic classification
por: R. Marcelino, Vanessa, et al.
Publicado: (2020) -
Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass, and reference genome properties
por: Schmidt, Alexandra, et al.
Publicado: (2022) -
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads
por: Petersen, Thomas Nordahl, et al.
Publicado: (2017) -
RESCRIPt: Reproducible sequence taxonomy reference database management
por: Robeson, Michael S., et al.
Publicado: (2021)