Cargando…

Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology

The abundance and potential functional roles of intrinsically disordered regions in aquaporin-4, Kir4.1, a dystrophin isoforms Dp71, α-1 syntrophin, and α-dystrobrevin; i.e., proteins constituting the functional core of the astrocytic dystrophin-associated protein complex (DAPC), are analyzed by a w...

Descripción completa

Detalles Bibliográficos
Autores principales: Na, Insung, Redmon, Derek, Kopa, Markus, Qin, Yiru, Xue, Bin, Uversky, Vladimir N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3754965/
https://www.ncbi.nlm.nih.gov/pubmed/24014171
http://dx.doi.org/10.1371/journal.pone.0073476
_version_ 1782281939261063168
author Na, Insung
Redmon, Derek
Kopa, Markus
Qin, Yiru
Xue, Bin
Uversky, Vladimir N.
author_facet Na, Insung
Redmon, Derek
Kopa, Markus
Qin, Yiru
Xue, Bin
Uversky, Vladimir N.
author_sort Na, Insung
collection PubMed
description The abundance and potential functional roles of intrinsically disordered regions in aquaporin-4, Kir4.1, a dystrophin isoforms Dp71, α-1 syntrophin, and α-dystrobrevin; i.e., proteins constituting the functional core of the astrocytic dystrophin-associated protein complex (DAPC), are analyzed by a wealth of computational tools. The correlation between protein intrinsic disorder, single nucleotide polymorphisms (SNPs) and protein function is also studied together with the peculiarities of structural and functional conservation of these proteins. Our study revealed that the DAPC members are typical hybrid proteins that contain both ordered and intrinsically disordered regions. Both ordered and disordered regions are important for the stabilization of this complex. Many disordered binding regions of these five proteins are highly conserved among vertebrates. Conserved eukaryotic linear motifs and molecular recognition features found in the disordered regions of five protein constituting DAPC likely enhance protein-protein interactions that are required for the cellular functions of this complex. Curiously, the disorder-based binding regions are rarely affected by SNPs suggesting that these regions are crucial for the biological functions of their corresponding proteins.
format Online
Article
Text
id pubmed-3754965
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-37549652013-09-06 Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology Na, Insung Redmon, Derek Kopa, Markus Qin, Yiru Xue, Bin Uversky, Vladimir N. PLoS One Research Article The abundance and potential functional roles of intrinsically disordered regions in aquaporin-4, Kir4.1, a dystrophin isoforms Dp71, α-1 syntrophin, and α-dystrobrevin; i.e., proteins constituting the functional core of the astrocytic dystrophin-associated protein complex (DAPC), are analyzed by a wealth of computational tools. The correlation between protein intrinsic disorder, single nucleotide polymorphisms (SNPs) and protein function is also studied together with the peculiarities of structural and functional conservation of these proteins. Our study revealed that the DAPC members are typical hybrid proteins that contain both ordered and intrinsically disordered regions. Both ordered and disordered regions are important for the stabilization of this complex. Many disordered binding regions of these five proteins are highly conserved among vertebrates. Conserved eukaryotic linear motifs and molecular recognition features found in the disordered regions of five protein constituting DAPC likely enhance protein-protein interactions that are required for the cellular functions of this complex. Curiously, the disorder-based binding regions are rarely affected by SNPs suggesting that these regions are crucial for the biological functions of their corresponding proteins. Public Library of Science 2013-08-27 /pmc/articles/PMC3754965/ /pubmed/24014171 http://dx.doi.org/10.1371/journal.pone.0073476 Text en © 2013 Na et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Na, Insung
Redmon, Derek
Kopa, Markus
Qin, Yiru
Xue, Bin
Uversky, Vladimir N.
Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title_full Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title_fullStr Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title_full_unstemmed Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title_short Ordered Disorder of the Astrocytic Dystrophin-Associated Protein Complex in the Norm and Pathology
title_sort ordered disorder of the astrocytic dystrophin-associated protein complex in the norm and pathology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3754965/
https://www.ncbi.nlm.nih.gov/pubmed/24014171
http://dx.doi.org/10.1371/journal.pone.0073476
work_keys_str_mv AT nainsung ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology
AT redmonderek ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology
AT kopamarkus ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology
AT qinyiru ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology
AT xuebin ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology
AT uverskyvladimirn ordereddisorderoftheastrocyticdystrophinassociatedproteincomplexinthenormandpathology