Cargando…

Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM)()

Insights into the human mitochondrial phylogeny have been primarily achieved by sequencing full mitochondrial genomes (mtGenomes). In forensic genetics (partial) mtGenome information can be used to assign haplotypes to their phylogenetic backgrounds, which may, in turn, have characteristic geographi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Parson, Walther, Strobl, Christina, Huber, Gabriela, Zimmermann, Bettina, Gomes, Sibylle M., Souto, Luis, Fendt, Liane, Delport, Rhena, Langit, Reina, Wootton, Sharon, Lagacé, Robert, Irwin, Jodi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2013
Materias:	Forensic Population Genetics—Original Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757157/ https://www.ncbi.nlm.nih.gov/pubmed/23948325 http://dx.doi.org/10.1016/j.fsigen.2013.06.003

Ejemplares similares

Blind study evaluation illustrates utility of the Ion PGM™ system for use in human identity DNA typing
por: Churchill, Jennifer D., et al.
Publicado: (2015)

A Protocol for mtGenome Analysis on Large Sample Numbers
por: Hamoy, Igor G, et al.
Publicado: (2014)

Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent(™) PGM(™)
por: Seo, Seung Bum, et al.
Publicado: (2015)

Deep-Coverage MPS Analysis of Heteroplasmic Variants within the mtGenome Allows for Frequent Differentiation of Maternal Relatives
por: Holland, Mitchell M., et al.
Publicado: (2018)

Human Mitochondrial Control Region and mtGenome: Design and Forensic Validation of NGS Multiplexes, Sequencing and Analytical Software
por: Holt, Cydne L., et al.
Publicado: (2021)

Improving Indel Detection Specificity of the Ion Torrent PGM Benchtop Sequencer
por: Yeo, Zhen Xuan, et al.
Publicado: (2012)

The mitochondrial genome of Atrocalopteryx melli Ris, 1912 (Zygoptera: Calopterygidae) via Ion Torrent PGM NGS sequencing
por: Xu, Shaolin, et al.
Publicado: (2018)

Sequencing strategy for the whole mitochondrial genome resulting in high quality sequences
por: Fendt, Liane, et al.
Publicado: (2009)

Improved visibility of character conflicts in quasi-median networks with the EMPOP NETWORK software
por: Zimmermann, Bettina, et al.
Publicado: (2014)

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
por: Bragg, Lauren M., et al.
Publicado: (2013)

First mtgenome sequences from three genera and phylogenetic relationships of the family Apidae based on mtgenome sequences (Hymenoptera: Apoidea)
por: Wen, Zhong-Quan, et al.
Publicado: (2021)

Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus
por: Song, Liting, et al.
Publicado: (2017)

Second generation sequencing allows for mtDNA mixture deconvolution and high resolution detection of heteroplasmy
por: Holland, Mitchell M., et al.
Publicado: (2011)

MtDNA diversity of Ghana: a forensic and phylogeographic view
por: Fendt, Liane, et al.
Publicado: (2012)

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
por: Lim, Yan Wei, et al.
Publicado: (2014)

A comparison of rumen microbial profiles in dairy cows as retrieved by 454 Roche and Ion Torrent (PGM) sequencing platforms
por: Indugu, Nagaraju, et al.
Publicado: (2016)

Validation of Ion Torrent(TM) Inherited Disease Panel with the PGM(TM) Sequencing Platform for Rapid and Comprehensive Mutation Detection
por: Mustafa, Abeer E., et al.
Publicado: (2018)

Optimized mtDNA Control Region Primer Extension Capture Analysis for Forensically Relevant Samples and Highly Compromised mtDNA of Different Age and Origin
por: Eduardoff, Mayra, et al.
Publicado: (2017)

Next-Generation Sequencing Workflow for NSCLC Critical Samples Using a Targeted Sequencing Approach by Ion Torrent PGM™ Platform
por: Vanni, Irene, et al.
Publicado: (2015)

Correlation between the number of false positive variants and the quality of results using Ion Torrent PGM™ sequencing to screen BRCA genes
por: Gouvêa Moreira, Tiago César, et al.
Publicado: (2021)

Human settlement history between Sunda and Sahul: a focus on East Timor (Timor-Leste) and the Pleistocenic mtDNA diversity
por: Gomes, Sibylle M, et al.
Publicado: (2015)

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity
por: Kemler, Martin, et al.
Publicado: (2013)

High-throughput sequencing of murine immunoglobulin heavy chain repertoires using single side unique molecular identifiers on an Ion Torrent PGM
por: Bürckert, Jean-Philippe, et al.
Publicado: (2018)

Simultaneous Whole Mitochondrial Genome Sequencing with Short Overlapping Amplicons Suitable for Degraded DNA Using the Ion Torrent Personal Genome Machine
por: Chaitanya, Lakshmi, et al.
Publicado: (2015)

Shifts of subgingival bacterial population after nonsurgical and pharmacological therapy of localized aggressive periodontitis, followed for 1 year by Ion Torrent PGM platform
por: Campisciano, Giuseppina, et al.
Publicado: (2017)

Inspecting close maternal relatedness: Towards better mtDNA population samples in forensic databases
por: Bodner, Martin, et al.
Publicado: (2011)

Identification of novel mutations including a double mutation in patients with inherited cardiomyopathy by a targeted sequencing approach using the Ion Torrent PGM system
por: ZHAO, YUE, et al.
Publicado: (2016)

Massively parallel sequencing of 231 autosomal SNPs with a custom panel: a SNP typing assay developed for human identification with Ion Torrent PGM
por: Zhang, Suhua, et al.
Publicado: (2017)

GLM-based optimization of NGS data analysis: A case study of Roche 454, Ion Torrent PGM and Illumina NextSeq sequencing data
por: Sandmann, Sarah, et al.
Publicado: (2017)

The complete mitogenome of Orcula dolium (Draparnaud, 1801); ultra-deep sequencing from a single long-range PCR using the Ion-Torrent PGM
por: Groenenberg, D. S. J., et al.
Publicado: (2017)

A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines
por: Branco, Gabriela Pereira, et al.
Publicado: (2020)

Familial hypercholesterolaemia in South Africans: tracking findings and developments over time
por: Delport, Rhena
Publicado: (2009)

Towards developing guidelines and systems of care to facilitate early reperfusion for ST -elevation myocardial infarction in Africa
por: Delport, Rhena
Publicado: (2014)

Appropriate strategies for South Africa for the management of acute myocardial infarction in patients presenting with ST-segment elevation
por: Rhena, Delport
Publicado: (2018)

Genomes of the Mouse Collaborative Cross
por: Srivastava, Anuj, et al.
Publicado: (2017)

A Genomic Reference Panel for Drosophila serrata
por: Reddiex, Adam J., et al.
Publicado: (2018)

Ion torrent high throughput mitochondrial genome sequencing (HTMGS)
por: Harvey, N. R., et al.
Publicado: (2019)

Fine-Tuning Phylogenetic Alignment and Haplogrouping of mtDNA Sequences
por: Dür, Arne, et al.
Publicado: (2021)

Whole-Genome Analysis of Multienvironment or Multitrait QTL in MAGIC
por: Verbyla, Arūnas P., et al.
Publicado: (2014)

Developmental Validation of a MPS Workflow with a PCR-Based Short Amplicon Whole Mitochondrial Genome Panel
por: Cihlar, Jennifer Churchill, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_oedgctrtiusfqscantbrpgrg4b