Cargando…

A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy

Pattern recognition approaches to the analysis of neuroimaging data have brought new applications such as the classification of patients and healthy controls within reach. In our view, the reliance on expensive neuroimaging techniques which are not well tolerated by many patient groups and the inabi...

Descripción completa

Detalles Bibliográficos
Autores principales: Hahn, Tim, Marquand, Andre F., Plichta, Michael M., Ehlis, Ann‐Christine, Schecklmann, Martin W., Dresler, Thomas, Jarczok, Tomasz A., Eirich, Elisa, Leonhard, Christine, Reif, Andreas, Lesch, Klaus‐Peter, Brammer, Michael J., Mourao‐Miranda, Janaina, Fallgatter, Andreas J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wiley Subscription Services, Inc., A Wiley Company 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3763208/
https://www.ncbi.nlm.nih.gov/pubmed/22965654
http://dx.doi.org/10.1002/hbm.21497
_version_ 1782282990081015808
author Hahn, Tim
Marquand, Andre F.
Plichta, Michael M.
Ehlis, Ann‐Christine
Schecklmann, Martin W.
Dresler, Thomas
Jarczok, Tomasz A.
Eirich, Elisa
Leonhard, Christine
Reif, Andreas
Lesch, Klaus‐Peter
Brammer, Michael J.
Mourao‐Miranda, Janaina
Fallgatter, Andreas J.
author_facet Hahn, Tim
Marquand, Andre F.
Plichta, Michael M.
Ehlis, Ann‐Christine
Schecklmann, Martin W.
Dresler, Thomas
Jarczok, Tomasz A.
Eirich, Elisa
Leonhard, Christine
Reif, Andreas
Lesch, Klaus‐Peter
Brammer, Michael J.
Mourao‐Miranda, Janaina
Fallgatter, Andreas J.
author_sort Hahn, Tim
collection PubMed
description Pattern recognition approaches to the analysis of neuroimaging data have brought new applications such as the classification of patients and healthy controls within reach. In our view, the reliance on expensive neuroimaging techniques which are not well tolerated by many patient groups and the inability of most current biomarker algorithms to accommodate information about prior class frequencies (such as a disorder's prevalence in the general population) are key factors limiting practical application. To overcome both limitations, we propose a probabilistic pattern recognition approach based on cheap and easy‐to‐use multi‐channel near‐infrared spectroscopy (fNIRS) measurements. We show the validity of our method by applying it to data from healthy controls (n = 14) enabling differentiation between the conditions of a visual checkerboard task. Second, we show that high‐accuracy single subject classification of patients with schizophrenia (n = 40) and healthy controls (n = 40) is possible based on temporal patterns of fNIRS data measured during a working memory task. For classification, we integrate spatial and temporal information at each channel to estimate overall classification accuracy. This yields an overall accuracy of 76% which is comparable to the highest ever achieved in biomarker‐based classification of patients with schizophrenia. In summary, the proposed algorithm in combination with fNIRS measurements enables the analysis of sub‐second, multivariate temporal patterns of BOLD responses and high‐accuracy predictions based on low‐cost, easy‐to‐use fNIRS patterns. In addition, our approach can easily compensate for variable class priors, which is highly advantageous in making predictions in a wide range of clinical neuroimaging applications. Hum Brain Mapp, 2013. © 2012 Wiley Periodicals, Inc.
format Online
Article
Text
id pubmed-3763208
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Wiley Subscription Services, Inc., A Wiley Company
record_format MEDLINE/PubMed
spelling pubmed-37632082013-09-09 A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy Hahn, Tim Marquand, Andre F. Plichta, Michael M. Ehlis, Ann‐Christine Schecklmann, Martin W. Dresler, Thomas Jarczok, Tomasz A. Eirich, Elisa Leonhard, Christine Reif, Andreas Lesch, Klaus‐Peter Brammer, Michael J. Mourao‐Miranda, Janaina Fallgatter, Andreas J. Hum Brain Mapp Research Articles Pattern recognition approaches to the analysis of neuroimaging data have brought new applications such as the classification of patients and healthy controls within reach. In our view, the reliance on expensive neuroimaging techniques which are not well tolerated by many patient groups and the inability of most current biomarker algorithms to accommodate information about prior class frequencies (such as a disorder's prevalence in the general population) are key factors limiting practical application. To overcome both limitations, we propose a probabilistic pattern recognition approach based on cheap and easy‐to‐use multi‐channel near‐infrared spectroscopy (fNIRS) measurements. We show the validity of our method by applying it to data from healthy controls (n = 14) enabling differentiation between the conditions of a visual checkerboard task. Second, we show that high‐accuracy single subject classification of patients with schizophrenia (n = 40) and healthy controls (n = 40) is possible based on temporal patterns of fNIRS data measured during a working memory task. For classification, we integrate spatial and temporal information at each channel to estimate overall classification accuracy. This yields an overall accuracy of 76% which is comparable to the highest ever achieved in biomarker‐based classification of patients with schizophrenia. In summary, the proposed algorithm in combination with fNIRS measurements enables the analysis of sub‐second, multivariate temporal patterns of BOLD responses and high‐accuracy predictions based on low‐cost, easy‐to‐use fNIRS patterns. In addition, our approach can easily compensate for variable class priors, which is highly advantageous in making predictions in a wide range of clinical neuroimaging applications. Hum Brain Mapp, 2013. © 2012 Wiley Periodicals, Inc. Wiley Subscription Services, Inc., A Wiley Company 2012-01-16 /pmc/articles/PMC3763208/ /pubmed/22965654 http://dx.doi.org/10.1002/hbm.21497 Text en Copyright © 2012 Wiley Periodicals, Inc. Open access.
spellingShingle Research Articles
Hahn, Tim
Marquand, Andre F.
Plichta, Michael M.
Ehlis, Ann‐Christine
Schecklmann, Martin W.
Dresler, Thomas
Jarczok, Tomasz A.
Eirich, Elisa
Leonhard, Christine
Reif, Andreas
Lesch, Klaus‐Peter
Brammer, Michael J.
Mourao‐Miranda, Janaina
Fallgatter, Andreas J.
A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title_full A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title_fullStr A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title_full_unstemmed A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title_short A novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
title_sort novel approach to probabilistic biomarker‐based classification using functional near‐infrared spectroscopy
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3763208/
https://www.ncbi.nlm.nih.gov/pubmed/22965654
http://dx.doi.org/10.1002/hbm.21497
work_keys_str_mv AT hahntim anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT marquandandref anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT plichtamichaelm anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT ehlisannchristine anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT schecklmannmartinw anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT dreslerthomas anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT jarczoktomasza anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT eirichelisa anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT leonhardchristine anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT reifandreas anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT leschklauspeter anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT brammermichaelj anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT mouraomirandajanaina anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT fallgatterandreasj anovelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT hahntim novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT marquandandref novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT plichtamichaelm novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT ehlisannchristine novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT schecklmannmartinw novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT dreslerthomas novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT jarczoktomasza novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT eirichelisa novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT leonhardchristine novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT reifandreas novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT leschklauspeter novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT brammermichaelj novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT mouraomirandajanaina novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy
AT fallgatterandreasj novelapproachtoprobabilisticbiomarkerbasedclassificationusingfunctionalnearinfraredspectroscopy